MirGeneDB 3.0

MirGeneDB ID

Ebu-Mir-19-P2e

Family name MIR-19 (all species)
Seed GUGCAAA
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-19-P1f 
Orthologues
Node of Origin (locus) E. burgeri
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)
FYBX02010694.1: 1553451-1553512 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUCCCAUCCUGAAAUGGUUGCGGCUGUUAGUUUUGCUGGUUUGCUUUCAGCUUUUUUAUCUGUACGCUGUGCAAAUCCAUGCAAAACUGACAGCGGUUGACCAGGCUCACCACUGGGACG
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Structure
        10         20         30         40         50        60
CCCUCCCAUCCUGAAAU-    -  G              -   -|    UUU    UUUUUU 
                  GGUU GC GCUGUUAGUUUUGC UGG UUUGC   CAGC      A
                  CCAG UG CGACAGUCAAAACG ACC AAACG   GUCG      U
GCAGGGUCACCACUCGGA    U  G              U   U^    U--    CAUGUC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Star sequence

Ebu-Mir-19-P2e_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUUUGCUGGUUUGCUUUCAGC -23
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Mature sequence

Ebu-Mir-19-P2e_3p

mirBase accessionNone
Sequence
39- UGUGCAAAUCCAUGCAAAACUGA -62
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