| MirGeneDB ID | Eca-Mir-592 |
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| Family name |
MIR-592 (all species) |
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| Seed |
UGUGUCA |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-592
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| Paralogues |
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| Orthologues |
Bta-Mir-592
Cfa-Mir-592
Cja-Mir-592
Cpo-Mir-592
Dno-Mir-592
Ete-Mir-592
Hsa-Mir-592
Laf-Mir-592
Mml-Mir-592
Mmr-Mir-592
Mmu-Mir-592
Ocu-Mir-592
Pab-Mir-592
Rno-Mir-592
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009151.1: 82508987-82509045 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAUUUAAUUUGAUAAUAUUAUGCCAUGACAUUGUGUCAAUAUGCGAUGAUGUGUGUGAUGGCACAGCGUCAUCACGUGGUGACGCAACAUCAUGACGUAAGACAUCACAACGCCAAUUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAUUUAAUUUGAUAAUA--| C CA A C GUGUGA
UUAUG CAUGA UUGUGUCA UAUG GAUGAUGU \
AAUGC GUACU AACGCAGU GUGC CUACUGCG U
AUUAACCGCAACACUACAG^ A AC G A ACACGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Mir-592 was classified in Fromm et al. (2015) as a non-canonical miRNA as the Dicer cut is always +3 but given the conservation of the Sequence and that it is clearly processed by Drosha it is accepted here as a bona fide miRNA. |
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| 3' NTU |
Unknown
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| Motifs | UGUG in loop |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-592_5p |
| mirBase accession | MIMAT0012946 |
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| Sequence |
0- UUGUGUCAAUAUGCGAUGAUGU -22
Get sequence
|
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| Star sequence |
Eca-Mir-592_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
38- UCAUCACGUGGUGACGCAACA -59
Get sequence
|
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