| MirGeneDB ID | Laf-Mir-592 |
|---|---|
| Family name | MIR-592 (all species) |
| Seed | UGUGUCA |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-592 Cfa-Mir-592 Cja-Mir-592 Cpo-Mir-592 Dno-Mir-592 Eca-Mir-592 Ete-Mir-592 Hsa-Mir-592 Mml-Mir-592 Mmr-Mir-592 Mmu-Mir-592 Ocu-Mir-592 Pab-Mir-592 Rno-Mir-592 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010032.1: 96762844-96762904 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAUUUAAUUUGAUGAUAUUAUGCUAUGACAUUGUGUCAAUAUGCGAUGAUGUGUUGUGAUGGCGCAGCGUCAUCACGUGGUGACGCAACAUCAUGACAUAAGACAUCACAACGCCAAGUAAGet precursor sequence |
| Structure | 10 20 30 40 50 AAUUUAAUUUGAUGAUA---| C CA A C GUUGUG UUAUG UAUGA UUGUGUCA UAUG GAUGAUGU A AAUAC GUACU AACGCAGU GUGC CUACUGCG U AAUGAACCGCAACACUACAG^ A AC G A ACGCGG . 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | Mir-592 was classified in Fromm et al. (2015) as a non-canonical miRNA as the Dicer cut is always +3 but given the conservation of the sequence and that it is clearly processed by Drosha it is accepted here as a bona fide miRNA. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-592_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUGUGUCAAUAUGCGAUGAUGU -22
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|
| Star sequence | Laf-Mir-592_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- UCAUCACGUGGUGACGCAACAU -61
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|
