MirGeneDB 3.0

MirGeneDB ID

Efe-Mir-1999-P2

Family name MIR-1999 (all species)
Seed GUAGCCA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1999-P1 
Orthologues Cte-Mir-1999  Dgr-Mir-1999  Pdu-Mir-1999 
Node of Origin (locus) E. fetida
Node of Origin (family) Pleistoannelida
Genome context
(Efe_combined)
Efet.01.369807: 44-115 [-]
Precursor
(pre-Mir +30nt flank)
CAGGAAGAGGUACAGUCGUAGGACGCGGAGAGACUCUAGCUCUGGUUACACAUGGCCUGGCCCUUCGUGUAAUAAUAUGUGUGUAGCCAGGGCUUGGGCCUGCUUCCUUCCUUAGUCACCAGCUGUCGCCAC
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Structure
        10         20        30         40        50        60      
CAGGAAGAGGUACAGUCGU-|   CGC    -  A   U               UGGCCUGGCCCUU 
                    AGGA   GGAG AG CUC AGCUCUGGUUACACA             \
                    UCCU   CUUC UC GGG UCGGGACCGAUGUGU             C
CACCGCUGUCGACCACUGAU^   UC-    G  C   U               GUAUAAUAAUGUG 
130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
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To
Star sequence

Efe-Mir-1999-P2_5p*

mirBase accessionNone
Sequence
0- AGACUCUAGCUCUGGUUACACA -22
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Mature sequence

Efe-Mir-1999-P2_3p

mirBase accessionNone
Sequence
51- UGUAGCCAGGGCUUGGGCCUG -72
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