MirGeneDB ID | Efe-Mir-1999-P2 |
Family name |
MIR-1999 (all species) |
Seed |
GUAGCCA |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-1999-P1
|
Orthologues |
Cte-Mir-1999
Dgr-Mir-1999
Pdu-Mir-1999
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Pleistoannelida
|
Genome context (Efe_combined) |
Efet.01.369807: 44-115 [-]
|
Precursor (pre-Mir +30nt flank) |
CAGGAAGAGGUACAGUCGUAGGACGCGGAGAGACUCUAGCUCUGGUUACACAUGGCCUGGCCCUUCGUGUAAUAAUAUGUGUGUAGCCAGGGCUUGGGCCUGCUUCCUUCCUUAGUCACCAGCUGUCGCCAC
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|
Structure | 10 20 30 40 50 60
CAGGAAGAGGUACAGUCGU-| CGC - A U UGGCCUGGCCCUU
AGGA GGAG AG CUC AGCUCUGGUUACACA \
UCCU CUUC UC GGG UCGGGACCGAUGUGU C
CACCGCUGUCGACCACUGAU^ UC- G C U GUAUAAUAAUGUG
130 120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Efe-Mir-1999-P2_5p* |
mirBase accession | None |
Sequence |
0- AGACUCUAGCUCUGGUUACACA -22
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|
Mature sequence |
Efe-Mir-1999-P2_3p |
mirBase accession | None |
Sequence |
51- UGUAGCCAGGGCUUGGGCCUG -72
Get sequence
|