| MirGeneDB ID | Pdu-Mir-1999 |
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| Family name |
MIR-1999 (all species) |
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| Seed |
AUGUAGC |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-1999
Dgr-Mir-1999
Efe-Mir-1999-P1
Efe-Mir-1999-P2
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| Node of Origin (locus) |
Pleistoannelida
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| Node of Origin (family) |
Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000001.1: 83695156-83695214 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAACAUCUAUAACACAGGCUGGUCUGGCAGGCUCUACUUUUGGCUAGAUAUUUAUAGAUAUCAAGUAUGUAGCCAAAGUUUGGGUCCGCCAGAUUAGCCAUUAACAACAUUGACACCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGAACAUCUAUAACACA--| A UAC G UAUAG
GGCUGGUCUGGC GGCUC UUUUGGCUA AUAUU \
CCGAUUAGACCG CUGGG GAAACCGAU UAUGA A
ACCACAGUUACAACAAUUA^ C UUU G ACUAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Mir-1999_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGCUCUACUUUUGGCUAGAUAUU -23
Get sequence
|
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| Mature sequence |
Pdu-Mir-1999_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAUGUAGCCAAAGUUUGGGUCCG -59
Get sequence
|
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