| MirGeneDB ID | Efe-Mir-1999-P1 |
|---|
| Family name |
MIR-1999 (all species) |
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| Seed |
GUAGCCA |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-1999-P2
|
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| Orthologues |
Cte-Mir-1999
Dgr-Mir-1999
Pdu-Mir-1999
|
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| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Pleistoannelida
|
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Genome context
(Efe_combined) |
Efet.01.157941: 683-742 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGAGGUAUACAGACUACAAAGGACGUGGAGAGACUCCAACCCCGGUUACACAUGUGUAAUAAUAUGGGUGUAGCCAGAGCUUGGGCCUGCUUCCUUCCUUGGUCACCAGCUGUCGCCACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAGGUAUACAGACUACA--| CGU - A U CCCC- AUGUGUA
AAGGA GGAG AG C CCAA GGUUACAC A
UUCCU CUUC UC G GGUU CCGAUGUG U
CCACCGCUGUCGACCACUGG^ UC- G C - CGAGA GGUAUAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-1999-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGACUCCAACCCCGGUUACACA -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-1999-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGUAGCCAGAGCUUGGGCCUGC -60
Get sequence
|
|---|
