| MirGeneDB ID | Efe-Mir-2685-P1b |
|---|
| Family name |
MIR-2685 (all species) |
|---|
| Seed |
AACUCAG |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-2685-P1a
Efe-Mir-2685-P2
|
|---|
| Orthologues |
Cte-Mir-2685-P1
Pdu-Mir-2685
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Pleistoannelida
|
|---|
Genome context
(Efe_combined) |
Efe-Mir-2685-P2b_manual_assembly: 37-98 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGUGUGUGUGUGUGUGUGUGUGUGUCUGUGGUGUCGCCCGAUCCGAGUUAUGCAGUGACUGGAAUUGCUCAUAACUCAGUCAGACCACACCAUGGCCUCUAUGCAGCUCAUGACUCCUCCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGUGUGUGUGUGUGUGU- UGU-| CGCCC CC CAGUGACU
GUGUG CUGUGGUGU GAU GAGUUAUG \
CGUAU GGUACCACA CUG CUCAAUAC G
CUCCUCCUCAGUACUCGA CUCC^ CCAGA A- UCGUUAAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-2685-P1b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUGUCGCCCGAUCCGAGUUAUG -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-2685-P1b_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UAACUCAGUCAGACCACACCA -62
Get sequence
|
|---|
