| MirGeneDB ID | Pdu-Mir-2685 |
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| Family name |
MIR-2685 (all species) |
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| Seed |
AACUCAG |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-2685-P1
Cte-Mir-2685-P2
Efe-Mir-2685-P1a
Efe-Mir-2685-P1b
Efe-Mir-2685-P2
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| Node of Origin (locus) |
Pleistoannelida
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| Node of Origin (family) |
Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000030.1: 5202778-5202833 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUACUACUUGCGACCUCUGGUGGGACCUGACAGUGGUAUGGCUCGAGUUGUAGAGACGUAACAUAUAACUCAGUCAGAUCACAGUCGGGUCUGCUGGACAUCAACGUCUCUGCAAC
Get precursor sequence
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| Structure | 10 20 30 40 50
CUACUACUUGCGACCUCU---| UG G A A C GAGAC
GG G ACCUGAC GUGGU UGGCU GAGUUGUA \
UC C UGGGCUG CACUA ACUGA CUCAAUAU G
CAACGUCUCUGCAACUACAGG^ GU - A G - ACAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Mir-2685_5p* |
| mirBase accession | None |
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| Sequence |
0- CAGUGGUAUGGCUCGAGUUGUA -22
Get sequence
|
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| Mature sequence |
Pdu-Mir-2685_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UAACUCAGUCAGAUCACAGUC -56
Get sequence
|
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