MirGeneDB 3.0

MirGeneDB ID

Egr-Mir-87-o28

Family name MIR-87 (all species)
Seed UGAGCAA
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-87
Paralogues
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) E. granulosus
Node of Origin (family) Protostomia
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000009.1: 962336-962429 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGUACUCCUGGAUGAUUCAGUCCGAAUGCCCACCUGUCAUUUUGCUCGAACCAGAGUUAUUCUUGGCGUCAUCCAUCUCUCGAAGGAUGUUUGCUAGGUUGGUGAGCAAAGUUUCAGGUGUGCUUUGGCUGAACAAGACUCCAAAGGCUGCGA
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Structure
        10            20        30        40        50        60        70       
UCGUACUCCUGGAUGAU----|   U     U  C      UC         GA    GAGUUAUUCUUGGCGUCAUCCA 
                     UCAG CCGAA GC CACCUG  AUUUUGCUC  ACCA                      U
                     AGUC GGUUU CG GUGGAC  UGAAACGAG  UGGU                      C
AGCGUCGGAAACCUCAGAACA^   -     -  U      UU         --    UGGAUCGUUUGUAGGAAGCUCU 
  150       140       130         120       110         100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Star sequence

Egr-Mir-87-o28_5p*

mirBase accessionMIMAT0020238
Sequence
0- CCACCUGUCAUUUUGCUCGAACCA -24
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Mature sequence

Egr-Mir-87-o28_3p

mirBase accessionMIMAT0020239
Sequence
72- GUGAGCAAAGUUUCAGGUGUGC -94
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