MirGeneDB ID | Egr-Mir-87-o28 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Hydatid worm (Echinococcus granulosus) |
MiRBase ID |
egr-mir-87
|
Paralogues |
|
Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
Node of Origin (locus) |
E. granulosus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000009.1: 962336-962429 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCGUACUCCUGGAUGAUUCAGUCCGAAUGCCCACCUGUCAUUUUGCUCGAACCAGAGUUAUUCUUGGCGUCAUCCAUCUCUCGAAGGAUGUUUGCUAGGUUGGUGAGCAAAGUUUCAGGUGUGCUUUGGCUGAACAAGACUCCAAAGGCUGCGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
UCGUACUCCUGGAUGAU----| U U C UC GA GAGUUAUUCUUGGCGUCAUCCA
UCAG CCGAA GC CACCUG AUUUUGCUC ACCA U
AGUC GGUUU CG GUGGAC UGAAACGAG UGGU C
AGCGUCGGAAACCUCAGAACA^ - - U UU -- UGGAUCGUUUGUAGGAAGCUCU
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Egr-Mir-87-o28_5p* |
mirBase accession | MIMAT0020238 |
Sequence |
0- CCACCUGUCAUUUUGCUCGAACCA -24
Get sequence
|
Mature sequence |
Egr-Mir-87-o28_3p |
mirBase accession | MIMAT0020239 |
Sequence |
72- GUGAGCAAAGUUUCAGGUGUGC -94
Get sequence
|