MirGeneDB 3.0

MirGeneDB ID

Esc-Mir-12502

Family name MIR-12502 (all species)
Seed GUUCCUA
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Npo-Mir-12502  Obi-Mir-12502  Ovu-Mir-12502 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Cephalopoda
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-5_pre_SRIE01025906.1:3068666-3068925: 101-160 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGACACGAUGCAAAGAACUUUGUUACCGUAUUCGGUCCUUUUUGGGACCUCCUUUUACAUUCACAGAAGUUCCUAGAUGGACUGAGAAUGGUAGCAGGGUAUUAUCACCAUGGAGAAUU
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Structure
        10          20        30        40        50         
AUGACACGAUGCAAAGA--|            A        U   U     C  CUUUUA 
                   ACUUUGUUACCGU UUCGGUCC UUU GGGAC UC      C
                   UGGGACGAUGGUA GAGUCAGG AGA CCUUG AG      A
UUAAGAGGUACCACUAUUA^            A        U   U     A  ACACUU 
.       110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Li
Star sequence

Esc-Mir-12502_5p*

mirBase accessionNone
Sequence
0- AUUCGGUCCUUUUUGGGACCUC -22
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Mature sequence

Esc-Mir-12502_3p

mirBase accessionNone
Sequence
38- AGUUCCUAGAUGGACUGAGAAU -60
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