MirGeneDB ID | Esc-Mir-12502 |
Family name |
MIR-12502 (all species) |
Seed |
GUUCCUA |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Npo-Mir-12502
Obi-Mir-12502
Ovu-Mir-12502
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Cephalopoda
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-5_pre_SRIE01025906.1:3068666-3068925: 101-160 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGACACGAUGCAAAGAACUUUGUUACCGUAUUCGGUCCUUUUUGGGACCUCCUUUUACAUUCACAGAAGUUCCUAGAUGGACUGAGAAUGGUAGCAGGGUAUUAUCACCAUGGAGAAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGACACGAUGCAAAGA--| A U U C CUUUUA
ACUUUGUUACCGU UUCGGUCC UUU GGGAC UC C
UGGGACGAUGGUA GAGUCAGG AGA CCUUG AG A
UUAAGAGGUACCACUAUUA^ A U U A ACACUU
. 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Mir-12502_5p* |
mirBase accession | None |
Sequence |
0- AUUCGGUCCUUUUUGGGACCUC -22
Get sequence
|
Mature sequence |
Esc-Mir-12502_3p |
mirBase accession | None |
Sequence |
38- AGUUCCUAGAUGGACUGAGAAU -60
Get sequence
|