MirGeneDB 3.0

MirGeneDB ID

Obi-Mir-12502

Family name MIR-12502 (all species)
Seed GUUCCUA
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12502  Npo-Mir-12502  Ovu-Mir-12502 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Cephalopoda
Genome context
(PRJNA270931_OBI)
KQ418263: 1045148-1045207 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUAUUCUGUUACCAUACUUUUCUAUCAUAUUCGGUCCUUUUUGGGACCUCGUUUCAAUCUAACGGAAGUUCCUAGAUGGACUGAGAAUGGUAGCUAAGUUCGACCACCAUAGCACAUU
Get precursor sequence
Structure
        10          20        30        40        50         
AAAUAUUCUGUUACCAU--|   UU       A        U   U     C  GUUUCA 
                   ACUU  CUAUCAU UUCGGUCC UUU GGGAC UC      A
                   UGAA  GAUGGUA GAGUCAGG AGA CCUUG AG      U
UUACACGAUACCACCAGCU^   UC       A        U   U     A  GCAAUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Obi-Mir-12502_5p*

mirBase accessionNone
Sequence
0- AUUCGGUCCUUUUUGGGACCUC -22
Get sequence
Mature sequence

Obi-Mir-12502_3p

mirBase accessionNone
Sequence
38- AGUUCCUAGAUGGACUGAGAAU -60
Get sequence