| MirGeneDB ID | Esc-Mir-12536 |
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| Family name |
MIR-12536 (all species) |
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| Seed |
GCCUUGC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Mir-12536
Ovu-Mir-12536
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-39_pre_SRIE01037593.1:6819590-6819730: 41-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGGUAGCGAAAUCCCCAGACUUCCCAUGUAGGGCAAUUCUGGCUGGGUCAUCGUGAUAAAAUUACUAUGCCUUGCCUUCUCUUGCCUUGGCUGGGAUUGGCUGAAAACAUCAACGACGUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUGGUAGCGAAAUCCCC- ACU- UG UUCU-| U U CGUGAUA
AG UCCCA UAGGGCAA GGC GGG CAU \
UC AGGGU GUUCCGUU CCG UCC GUA A
CUGCAGCAACUACAAAAG GGUU CG CUCUU^ U - UCAUUAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Esc-Mir-12536_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGCAAUUCUGGCUGGGUCAUC -23
Get sequence
|
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| Mature sequence |
Esc-Mir-12536_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGCCUUGCCUUCUCUUGCCUUGG -61
Get sequence
|
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