MirGeneDB 3.0

MirGeneDB ID

Ovu-Mir-12536

Family name MIR-12536 (all species)
Seed GCCUUGC
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12536  Obi-Mir-12536 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01036038.1: 215236-215296 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGACGGACAUAAAGAAAUGUCUUUCAUCCAGGGCAACUCUGGCUGGGUCAUCGUGAAAUAUUUGCUAUGCCUUGCCUUCUCUUGCCUUGGCUGAGAUUGACAGAUAACGGCAGACAGUAG
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Structure
        10        20          30        40         50          
UUGACGGACAUAAAGAAA    --     U         CUCU-|  U   U   CGUGAAA 
                  UGUC  UUUCA CCAGGGCAA     GGC GGG CAU       \
                  ACAG  AGAGU GGUUCCGUU     CCG UCC GUA       U
GAUGACAGACGGCAAUAG    UU     C         CUCUU^  U   -   UCGUUUA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ax Ce Fr He In Op Op Pe Po Re Sk St Su Su Te Ve Vi Wh
Star sequence

Ovu-Mir-12536_5p*

mirBase accessionNone
Sequence
0- AGGGCAACUCUGGCUGGGUCAUC -23
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Mature sequence

Ovu-Mir-12536_3p

mirBase accessionNone
Sequence
38- UGCCUUGCCUUCUCUUGCCUUGG -61
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