| MirGeneDB ID | Obi-Mir-12536 |
|---|
| Family name |
MIR-12536 (all species) |
|---|
| Seed |
GCCUUGC |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Mir-12536
Ovu-Mir-12536
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ422677: 334110-334170 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUGACGGACAUAAAGAAAUGUCUUUCAUCCAGGGCAACUCUGGCUGGGUCAUCGUGAAAUAUUUGCUAUGCCUUGCCUUCUCUUGCCUUGGCUGAGAUUGACAGAUAACGGCAGACAGCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGACGGACAUAAAGAAA -- U CUCU-| U U CGUGAAA
UGUC UUUCA CCAGGGCAA GGC GGG CAU \
ACAG AGAGU GGUUCCGUU CCG UCC GUA U
GACGACAGACGGCAAUAG UU C CUCUU^ U - UCGUUUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Mir-12536_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGCAACUCUGGCUGGGUCAUC -23
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12536_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGCCUUGCCUUCUCUUGCCUUGG -61
Get sequence
|
|---|
