MirGeneDB 3.0

MirGeneDB ID

Esc-Mir-12547

Family name MIR-12547 (all species)
Seed GUCUCAU
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Mir-12547  Ovu-Mir-12547 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-50_pre_SRIE01047148.1:1408822-1408965: 44-101 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUCUAUAUUACCACCUGCUGAUUUCUAUUGUCUCAUGUAUUGGAAUGUUGCCUCAGUUUCACCAACAUUCCAGUGCCUGAGUCAUAGACAACAGUACCUCACAUCUCAUCUUCAUC
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Structure
        10           20        30        40        50        
GGUUCUAUAUUACCACC---|    AUU     U U    U              CCUCA 
                    UGCUG   UCUAU G CUCA GUAUUGGAAUGUUG     G
                    AUGAC   AGAUA C GAGU CGUGACCUUACAAC     U
CUACUUCUACUCUACACUCC^    AAC     - U    C              CACUU 
      110       100        90         80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Li
Mature sequence

Esc-Mir-12547_5p

mirBase accessionNone
Sequence
0- UGUCUCAUGUAUUGGAAUGUUG -22
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Star sequence

Esc-Mir-12547_3p*

mirBase accessionNone
Sequence
36- ACAUUCCAGUGCCUGAGUCAUA -58
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