MirGeneDB 3.0

MirGeneDB ID

Ovu-Mir-12547

Family name MIR-12547 (all species)
Seed GUCUCAU
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12547  Obi-Mir-12547 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01012780.1: 914-971 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUAAAGAUAUCACUCAUGCUGAUUUCUAUAGUCUCAUGUAUUGGAAUGUUGCCUCUAUUUUACCAACAUUCCAGUGCAUGAGUCAUAGAGAACAGUACAAGGCAUCAUAAUAGUCAA
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Structure
        10           20        30        40        50        
UAUAAAGAUAUCACUCA---|    A       AGU                   CCUCU 
                    UGCUG UUUCUAU   CUCAUGUAUUGGAAUGUUG     A
                    AUGAC AGAGAUA   GAGUACGUGACCUUACAAC     U
AACUGAUAAUACUACGGAAC^    A       CU-                   CAUUU 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ax Ce Fr He In Op Op Pe Po Re Sk St Su Su Te Ve Vi Wh
Mature sequence

Ovu-Mir-12547_5p

mirBase accessionNone
Sequence
0- AGUCUCAUGUAUUGGAAUGUUG -22
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Star sequence

Ovu-Mir-12547_3p*

mirBase accessionNone
Sequence
36- ACAUUCCAGUGCAUGAGUCAUA -58
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