MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-2954

Family name MIR-2954 (all species)
Seed AUCCCCA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-2954
Paralogues
Orthologues Cli-Mir-2954  Tgu-Mir-2954 
Node of Origin (locus) Neognathae
Node of Origin (family) Neognathae
Genome context
(Gallus_gallus.GRCg6a)		 Z: 70937428-70937488 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2954)		 Mir-2954 Z: 70937428-70937488 [+] UCSC Ensembl
Mir-2131 Z: 70948215-70948279 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCGCAGAACGAGCCUGGGCUUGGAGCAGUGCUGAGAGGGCUUGGGGAGAGGAUUGUAGUGGAGCUCCAUCCCCAUUCCACUCCUAGCAGCUCUCUGGCCAUCCACCCCCGCUGCUGCCG
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Structure
        10          20         30         40        50        60
CGGCGCAGAACGAGCCUG--    U-|    AG     A   -  CU      GA   UUGUA 
                    GGCU  GGAGC  UGCUG GAG GG  UGGGGA  GGA     G
                    CCGG  UCUCG  ACGAU CUC CC  ACCCCU  CCU     U
GCCGUCGUCGCCCCCACCUA    UC^    --     C   A  UU      A-   CGAGG 
 .       110       100          90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-2954_5p*
mirBase accessionNone
Sequence 
0- UGCUGAGAGGGCUUGGGGAGAGGA -24
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Mature sequence

Gga-Mir-2954_3p
mirBase accessionMIMAT0014448
Sequence 
38- CAUCCCCAUUCCACUCCUAGCAG -61
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Proposed targets TargetScanVert: gga-miR-2954
miRDB: MIMAT0014448