MirGeneDB ID | Gmo-Mir-7132-P1 |
Family name |
MIR-7132 (all species) |
Seed |
ACUUGGU |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-7132b
|
Paralogues |
Gmo-Mir-7132-P2
|
Orthologues |
Dre-Mir-7132-P1
Mal-Mir-7132-P1
Tni-Mir-7132-P1
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Clupeocephala
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1698: 26933-26990 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUUUAGGCCCCAUAGUGUCUCUGCCCCUGGACUUGGUCGAAGCUCCUCAGGCUUACUUGAACCUCUGAGAUGUUUGGAACAAGUACAGGGUCUGGGGCAAUGUCGUGGUGGACUGGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUUUAGGCCCCAUAGU--| UGC G G G UC CUUAC
GUCUC CCCUG ACUUG UC AAGC CUCAGG U
CGGGG GGGAC UGAAC AG UUUG GAGUCU U
UGGUCAGGUGGUGCUGUAA^ UCU A A G UA CCAAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-7132-P1_5p |
mirBase accession | MIMAT0044139 |
Sequence |
0- GACUUGGUCGAAGCUCCUCAGG -22
Get sequence
|
Co-mature sequence |
Gmo-Mir-7132-P1_3p |
mirBase accession | MIMAT0044140 |
Sequence |
36- UGAGAUGUUUGGAACAAGUACA -58
Get sequence
|