MirGeneDB ID | Gmo-Mir-7132-P2 |
Family name |
MIR-7132 (all species) |
Seed |
ACUUGGU |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-7132a
|
Paralogues |
Gmo-Mir-7132-P1
|
Orthologues |
Mal-Mir-7132-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Clupeocephala
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_3795: 75041-75097 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUCGCCAAGUCUGGCUGUCUCUUCCCCUGGACUUGGUCAAAGCUCCUCAGUACAGCAACAACUCUGAGGCGUUUGGAACAAGUUCAGGGUUCGGGACCCAAUCUGCCAGGGUUUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUCGCCAAGUCUGGCU--| UUC G A U UACAGC
GUCUC CCCUGGACUUG UC AAGC CCUCAG \
CAGGG GGGACUUGAAC AG UUUG GGAGUC A
GGUUUGGGACCGUCUAACC^ CUU A G C UCAACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-7132-P2_5p |
mirBase accession | MIMAT0044250 |
Sequence |
0- GACUUGGUCAAAGCUCCUCAGU -22
Get sequence
|
Co-mature sequence |
Gmo-Mir-7132-P2_3p |
mirBase accession | MIMAT0044251 |
Sequence |
35- UGAGGCGUUUGGAACAAGUUCA -57
Get sequence
|