MirGeneDB ID | Gpa-Mir-14 |
Family name |
MIR-14 (all species) |
Seed |
CAGUCUU |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-14
Aga-Mir-14
Bge-Mir-14
Dan-Mir-14
Dlo-Mir-14
Dme-Mir-14
Dmo-Mir-14
Dsi-Mir-14
Dya-Mir-14
Hme-Mir-14
Tca-Mir-14
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Node of Origin (locus) |
Neoptera
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Node of Origin (family) |
Neoptera
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Genome context (GpalI1) |
Scaffold360: 74590-74661 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GUUUCUGAAACAACGCACUGCAACAUAUGUGGGAGCGAGAUAGGGACUUGCUGUGAUUUUAUUAUCGUCAAUUCGACAAGUCAGUCUUUUUCUCUCUCCUAUAAAAAAUUGCGGGCGUAUCAUCCUAAGUAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUUCUGAAACAACGCA- CAUA-| C U U GUGAUUUUAUUA
CUGCAA UGUGGGAG GAGA AGGGACU GCU U
GGCGUU AUAUCCUC CUCU UUUCUGA UGA C
AAUGAAUCCUACUAUGCG AAAAA^ U U C ACAGCUUAACUG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
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Motifs | UGUG in loop |
Tissue expression
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Star sequence |
Gpa-Mir-14_5p* |
mirBase accession | None |
Sequence |
0- GGGAGCGAGAUAGGGACUUGCU -22
Get sequence
|
Mature sequence |
Gpa-Mir-14_3p |
mirBase accession | None |
Sequence |
50- UCAGUCUUUUUCUCUCUCCUAU -72
Get sequence
|