MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-87-o42

Family name MIR-87 (all species)
Seed UGAGCAA
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-87
Paralogues
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) G. salaris
Node of Origin (family) Protostomia
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006949880: 3080-3200 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCCACAUGAUCCCAUAUGAAACCAUGAUACGCCUGAUACUAGGCUCUUACCAUCAGAGUUGAUAGAAAGAAUAUUUCUGUAUCGAAGGAAUUGAUUUUCCCGCAAUACUAAAAUCUUUUUACUUUUGGUGAGCAAAGUUUCAGGUGUGCCUUCGUUUCUCUAAUCCCCGUCAGUACACG
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Structure
        10          20        30        40        50        60        70        80        90 
AUCCCACAUGAUCCCAUAU--|    CAUGA         U   AG    UU    UCAGAGUUGAUAGAAAGAAUAUUUCUGUAUCGAAGG 
                     GAAAC     UACGCCUGA ACU  GCUC  ACCA                                    \
                     CUUUG     GUGUGGACU UGA  CGAG  UGGU                                    A
GCACAUGACUGCCCCUAAUCU^    CUUCC         U   AA    --    UUUCAUUUUUCUAAAAUCAUAACGCCCUUUUAGUUA 
 .       170       160       150       140         130       120       110       100
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gsa-Mir-87-o42_5p*
mirBase accessionMIMAT0035242
Sequence 
0- ACGCCUGAUACUAGGCUCUUACCA -24
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Mature sequence

Gsa-Mir-87-o42_3p
mirBase accessionMIMAT0035243
Sequence 
99- GUGAGCAAAGUUUCAGGUGUGC -121
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