MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-3338

Family name MIR-3338 (all species)
Seed UGUACUU
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-3338
Paralogues
Orthologues
Node of Origin (locus) H. melpomene
Node of Origin (family) H. melpomene
Genome context
(Hmel_1)		 HE671311: 86526-86586 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-3338)		 Mir-3327 HE671311: 86391-86452 [-] Ensembl
Mir-3338 HE671311: 86526-86586 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUUGGACAAAAUUAUAAGAAUGUUUCAUAGCAAACACAGUAGUGUACAAUGCUAAGUUGACAUACGCAUGUACUUACUUUGUUUGUUCUGGAAUCUUCUUUAAGCUACAACUUGGAGAA
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Structure
        10          20        30        40        50        60 
AAAUUGGACAAAAUUAU--|    U      U        C     U     A   UAAGUU 
                   AAGAA GUUUCA AGCAAACA AGUAG GUACA UGC      \
                   UUCUU UAAGGU UUGUUUGU UCAUU CAUGU ACG      G
AAGAGGUUCAACAUCGAAU^    C      C        U     -     -   CAUACA 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-3338_5p*
mirBase accessionNone
Sequence 
0- AGCAAACACAGUAGUGUACAAUGC -24
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Mature sequence

Hme-Mir-3338_3p
mirBase accessionMIMAT0024982
Sequence 
39- AUGUACUUACUUUGUUUGUUCU -61
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