MirGeneDB ID | Hmi-Mir-29-o5a |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Panther worm (Hofstenia miamia) |
MiRBase ID |
|
Paralogues |
Hmi-Mir-29-o4
Hmi-Mir-29-o5b
|
Orthologues |
Gsp-Mir-29
|
Node of Origin (locus) |
H. miamia
|
Node of Origin (family) |
Bilateria
|
Genome context (Hofstenia_miamia.HmiaM1.dna.nonchromosomal) |
SCFE01000053.1: 92662-92713 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUGAUUUAUCAUUUGAUUUAUUUAAGUAACCUGCUUAUAUUUGGUGUACAGAUUUUCUCUAGCACCAAGUAAAAGCGGUUUAUGUUGAAUUACCUCUAUAUGUAAGUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUGAUUUAUCAUUUGAUUU- -| C A AC UU
AUUUAA GUAA CUGCUU UAUUUGGUGU AGA \
UAAGUU UAUU GGCGAA AUGAACCACG UCU U
UUUUUGAAUGUAUAUCUCCAU G^ U A A- CU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Hmi-Mir-29-o5a_5p* |
mirBase accession | None |
Sequence |
0- CCUGCUUAUAUUUGGUGUACAGA -23
Get sequence
|
Mature sequence |
Hmi-Mir-29-o5a_3p |
mirBase accession | None |
Sequence |
30- UAGCACCAAGUAAAAGCGGUUU -52
Get sequence
|