MirGeneDB 3.0

MirGeneDB ID

Hru-Mir-12588

Family name MIR-12588 (all species)
Seed GUGAUAG
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues
Orthologues Lgi-Mir-12588 
Node of Origin (locus) Gastropoda
Node of Origin (family) Gastropoda
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)
gb|JALGQB010000184.1|:58662-58925: 102-160 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUACAAGAUAAGUUUGUUCCUGCUGUUGUGUGAUAGAUGCUGCAUUUGCUGGCUGCAAGAACGAGUAAAUGCAUCCUCUAUUACCCACACAGCCGGAGCACUGCAUCGACUAUUAUC
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Structure
        10         20         30        40        50         
UGCUACAAGAUAAGUUU-     U     -  U        UGC          -|GCUG 
                  GUUCC GCUGU UG GUGAUAGA   UGCAUUUGCU G    C
                  CGAGG CGACA AC CAUUAUCU   ACGUAAAUGA C    A
CUAUUAUCAGCUACGUCA     C     C  C        CCU          G^AAGA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Mature sequence

Hru-Mir-12588_5p (predicted)

mirBase accessionNone
Sequence
0- UGUGAUAGAUGCUGCAUUUGCUG -23
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Star sequence

Hru-Mir-12588_3p* (predicted)

mirBase accessionNone
Sequence
36- GUAAAUGCAUCCUCUAUUACCCA -59
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