MirGeneDB ID | Hru-Mir-12588 |
Family name |
MIR-12588 (all species) |
Seed |
GUGAUAG |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
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Paralogues |
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Orthologues |
Lgi-Mir-12588
|
Node of Origin (locus) |
Gastropoda
|
Node of Origin (family) |
Gastropoda
|
Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
gb|JALGQB010000184.1|:58662-58925: 102-160 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGCUACAAGAUAAGUUUGUUCCUGCUGUUGUGUGAUAGAUGCUGCAUUUGCUGGCUGCAAGAACGAGUAAAUGCAUCCUCUAUUACCCACACAGCCGGAGCACUGCAUCGACUAUUAUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCUACAAGAUAAGUUU- U - U UGC -|GCUG
GUUCC GCUGU UG GUGAUAGA UGCAUUUGCU G C
CGAGG CGACA AC CAUUAUCU ACGUAAAUGA C A
CUAUUAUCAGCUACGUCA C C C CCU G^AAGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Hru-Mir-12588_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGUGAUAGAUGCUGCAUUUGCUG -23
Get sequence
|
Star sequence |
Hru-Mir-12588_3p* (predicted) |
mirBase accession | None |
Sequence |
36- GUAAAUGCAUCCUCUAUUACCCA -59
Get sequence
|