| MirGeneDB ID | Laf-Mir-194-P1 |
|---|
| Family name |
MIR-194 (all species) |
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| Seed |
GUAACAG |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
Laf-Mir-194-P2
|
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| Orthologues |
Ebu-Mir-194-o1
Pma-Mir-194-o1
|
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| Node of Origin (locus) |
Vertebrata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010101.1: 8120703-8120760 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUCAGGAAAAGCUUAAUGGAGUUAUCAAAUGUAACAGCAACUCCAUGUGGACCAGGUACCGACUUCCAGUGGGGAUGCUGUUACUUUUGAUGGCUACCAAUGAGCUACAACGCAAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUCAGGAAAAGCUUAA- -| U A G CCAGGU
UGG AGUUAUCAAA GUAACAGCA CUCCAU UGGA \
ACC UCGGUAGUUU CAUUGUCGU GGGGUG ACCU A
GAAACGCAACAUCGAGUA A^ U A - UCAGCC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Laf-Mir-194-P1_5p |
| mirBase accession | None |
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| Sequence |
0- UGUAACAGCAACUCCAUGUGGAC -23
Get sequence
|
|---|
| Star sequence |
Laf-Mir-194-P1_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- CCAGUGGGGAUGCUGUUACUUU -58
Get sequence
|
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