| MirGeneDB ID | Pma-Mir-194-o1 |
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| Family name |
MIR-194 (all species) |
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| Seed |
GUAACAG |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Ebu-Mir-194-o1
Laf-Mir-194-P1
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| Node of Origin (locus) |
Cyclostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046074.1: 5107960-5108016 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGUUUGUGCCACCCACAGUGUGCAUCAGGUGUAACAGCAACUCCAUGUGGAUGUUCCAUCGCUCCCAGUGGAGUUACUGUUACUUUUGAUGGACAUUCACUUGAACAUCGACUGCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGUUUGUGCCACCCAC--| G U C GU UGUUC
AGUGU CAUCAGG GUAACAG AACUCCAU GGA \
UUACA GUAGUUU CAUUGUC UUGAGGUG CCU C
UCGUCAGCUACAAGUUCAC^ G U A AC CGCUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-194-o1_5p |
| mirBase accession | None |
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| Sequence |
0- UGUAACAGCAACUCCAUGUGGA -22
Get sequence
|
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| Star sequence |
Pma-Mir-194-o1_3p* |
| mirBase accession | None |
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| Sequence |
35- CCAGUGGAGUUACUGUUACUUU -57
Get sequence
|
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