Mir-193-P1p

MirGeneDB ID

Lan-Mir-193-P1p

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Lingula (Lingula anatina)

MiRBase ID

Paralogues

Lan-Mir-193-P1q Lan-Mir-193-P2p Lan-Mir-193-P2q

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(LinAna_1.0)

LFEI01000500: 127748-127808 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AACAGUACGGGCUACACGUCCUCUCUCAUCAGGGAGUUUGCUCGCCAUGCUUAUGGCUCUGAACCUAUAAACUGGCCUGCAAAAUCCCUUCUGACGUGGGGACAUUGAGCAAACCCGUGAU

Get precursor sequence

Structure

        10         20         30        40        50          
AACAGUACGGGCUACAC-      UC-|  UC     G     UC    UGCUUAUGGCUC 
                  GUCCUC   UCA  AGGGA UUUGC  GCCA            \
                  CAGGGG   AGU  UCCCU AAACG  CGGU            U
UAGUGCCCAAACGAGUUA      UGC^  CU     A     UC    CAAAUAUCCAAG 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To	To

Star sequence

Lan-Mir-193-P1p_5p* (predicted)

mirBase accession

None

Sequence

0- AGGGAGUUUGCUCGCCAUGCUUA -23

Get sequence

Mature sequence

Lan-Mir-193-P1p_3p

mirBase accession

None

Sequence

39- AACUGGCCUGCAAAAUCCCUUC -61

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