MirGeneDB 3.0

MirGeneDB ID

Mgi-Mir-193-P1

Family name

MIR-193 (all species)

Seed

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-193-P2

Orthologues

Aae-Mir-193-P1 Aca-Mir-193-P1b Aga-Mir-193-P1 Agr-Mir-193-P1l Agr-Mir-193-P1m Ami-Mir-193-P1a Ami-Mir-193-P1b Bfl-Mir-193-P1e Bfl-Mir-193-P1j Bfl-Mir-193-P1k Bfl-Mir-193-P1o1a Bfl-Mir-193-P1o1b Bfl-Mir-193-P1o2 Bge-Mir-193-P1 Bla-Mir-193-P1e Bla-Mir-193-P1f1 Bla-Mir-193-P1f2 Bla-Mir-193-P1g1 Bla-Mir-193-P1g2 Bla-Mir-193-P1h1 Bla-Mir-193-P1h2 Bla-Mir-193-P1i1 Bla-Mir-193-P1i2 Bla-Mir-193-P1j1 Bla-Mir-193-P1j2 Bla-Mir-193-P1k Bta-Mir-193-P1a Bta-Mir-193-P1b Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cfa-Mir-193-P1a Cfa-Mir-193-P1b Cja-Mir-193-P1a Cja-Mir-193-P1b Cli-Mir-193-P1a Cmi-Mir-193-P1a Cmi-Mir-193-P1b Cpi-Mir-193-P1a Cpi-Mir-193-P1b Cpo-Mir-193-P1a Cpo-Mir-193-P1b Csc-Mir-193-P1u Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dno-Mir-193-P1a Dno-Mir-193-P1b Dpu-Mir-193-P1 Dre-Mir-193-P1a Dre-Mir-193-P1b1 Dre-Mir-193-P1b2 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Eca-Mir-193-P1a Eca-Mir-193-P1b Efe-Mir-193-P1n Efe-Mir-193-P1o Esc-Mir-193-P1 Ete-Mir-193-P1a Ete-Mir-193-P1b Gga-Mir-193-P1a Gga-Mir-193-P1b Gja-Mir-193-P1b Gmo-Mir-193-P1b2 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1a Hsa-Mir-193-P1b Isc-Mir-193-P1 Laf-Mir-193-P1a Laf-Mir-193-P1b Lan-Mir-193-P1p Lan-Mir-193-P1q Lch-Mir-193-P1a Lch-Mir-193-P1b Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1a Loc-Mir-193-P1b Loc-Mir-193-P1b-as Lpo-Mir-193-P1r Lpo-Mir-193-P1s Lpo-Mir-193-P1t Mal-Mir-193-P1b2 Mdo-Mir-193-P1a Mdo-Mir-193-P1b Mml-Mir-193-P1a Mml-Mir-193-P1b Mmr-Mir-193-P1a Mmr-Mir-193-P1b Mmu-Mir-193-P1a Mmu-Mir-193-P1b Mom-Mir-193-P1 Mun-Mir-193-P1a Mun-Mir-193-P1b Neu-Mir-193-P1b Npo-Mir-193-P1 Oan-Mir-193-P1a Oan-Mir-193-P1b Obi-Mir-193-P1 Ocu-Mir-193-P1a Ocu-Mir-193-P1b Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1a Pab-Mir-193-P1b Pau-Mir-193-P1 Pbv-Mir-193-P1a Pbv-Mir-193-P1b Pcr-Mir-193-P1 Pfl-Mir-193-P1c Pfl-Mir-193-P1d Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1a Rno-Mir-193-P1b Rph-Mir-193-P1 Sha-Mir-193-P1a Sha-Mir-193-P1b Sko-Mir-193-P1c Sko-Mir-193-P1d Snu-Mir-193-P1 Spt-Mir-193-P1a Spt-Mir-193-P1b Sto-Mir-193-P1a Sto-Mir-193-P1b Tca-Mir-193-P1 Tgu-Mir-193-P1a Tgu-Mir-193-P1b Tni-Mir-193-P1b2 War-Mir-193-P1 Xbo-Mir-193-P1 Xla-Mir-193-P1a3 Xla-Mir-193-P1a4 Xtr-Mir-193-P1a

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold1144: 321631-321689 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AGAGACAAAUAAAGACUUCAUUCACUCGUUGGGGAGUUUGCGCGACAGUGUGUACAAGAUUUAAUCGUACUGGCCUGCAAAAUCCCAAAUGGAGUGGAAACGUUCUCAGCAGUGUAAUG

Get precursor sequence

Structure

        10        20          30        40        50         
AGAGACAAAUAAAGACUUCA-      -|   G    G      CGA       UACAAG 
                     UUCACU CGUU GGGA UUUGCG   CAGUGUG      \
                     AGGUGA GUAA CCCU AAACGU   GUCAUGC      A
GUAAUGUGACGACUCUUGCAA      G^   A    A      CCG       UAAUUU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-193-P1_5p*

mirBase accession

None

Sequence

0- GGGGAGUUUGCGCGACAGUGUG -22

Get sequence

Mature sequence

Mgi-Mir-193-P1_3p

mirBase accession

None

Sequence

37- UACUGGCCUGCAAAAUCCCAAA -59

Get sequence