Mir-193-P1d

MirGeneDB ID

Sko-Mir-193-P1d

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Saccoglossus (Saccoglossus kowalevskii)

MiRBase ID

sko-mir-193b

Paralogues

Sko-Mir-193-P1c Sko-Mir-193-P2

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pfl-Mir-193-P1d Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Enteropneusta

Node of Origin (family)

Bilateria

Genome context
(Skow_1.1)

NW_003119955.1: 7997-8058 [+]

Clustered miRNAs
(< 50kb from Mir-193-P1d)

Mir-193-P1c NW_003119955.1: 7658-7714 [+]
Mir-193-P1d NW_003119955.1: 7997-8058 [+]
Mir-193-P2 NW_003119955.1: 8988-9044 [+]

Precursor
(pre-Mir +30nt flank)

GAAAAUGUAGAAAAGCUGUUCAUAUGUUUUGGGGGUUUCUCUGGCCACAGUAUGAAACGUACAAUCCUCAUACUGGCCAGCGAAAUCCCAAAAACAGAAGAACAUUAUCAUCGAUUAAGUUC

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Structure

        10          20        30        40        50        60 
GAAAAUGUAGAAAAGCU--|   AUA      G        U       CA     AAACGU 
                   GUUC   UGUUUU GGGGUUUC CUGGCCA  GUAUG      A
                   CAAG   ACAAAA CCCUAAAG GACCGGU  CAUAC      C
CUUGAAUUAGCUACUAUUA^   AAG      A        C       --     UCCUAA 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Sko-Mir-193-P1d_5p* (predicted)

mirBase accession

None

Sequence

0- GGGGGUUUCUCUGGCCACAGUAUG -24

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Mature sequence

Sko-Mir-193-P1d_3p

mirBase accession

MIMAT0009677

Sequence

40- UACUGGCCAGCGAAAUCCCAAA -62

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