Mir-193-P1c

MirGeneDB ID

Sko-Mir-193-P1c

Family name

MIR-193 (all species)

Seed

GGGAUUU

Species

Saccoglossus (Saccoglossus kowalevskii)

MiRBase ID

sko-mir-193a

Paralogues

Sko-Mir-193-P1d Sko-Mir-193-P2

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pfl-Mir-193-P1c Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Enteropneusta

Node of Origin (family)

Bilateria

Genome context
(Skow_1.1)

NW_003119955.1: 7658-7714 [+]

Clustered miRNAs
(< 50kb from Mir-193-P1c)

Mir-193-P1c NW_003119955.1: 7658-7714 [+]
Mir-193-P1d NW_003119955.1: 7997-8058 [+]
Mir-193-P2 NW_003119955.1: 8988-9044 [+]

Precursor
(pre-Mir +30nt flank)

UACGCCGUGUAUUCGUUGCCAGCAUUGUUACGGGAUUUGAUUGAUCAGUUCAAGUGUUUUGUCUGAACUGGCCUUUUAAGUCCCGCAAUGUUGCUGGUGUUAUUCAGAAACAGAAAA

Get precursor sequence

Structure

        10          20        30        40        50        
UACGCCGUGUAUUCGUU--|      UU   A          UUGA        AGUGU 
                   GCCAGCA  GUU CGGGAUUUGA    UCAGUUCA     \
                   UGGUCGU  UAA GCCCUGAAUU    GGUCAAGU     U
AAAAGACAAAGACUUAUUG^      UG   C          UUCC        CUGUU 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Sko-Mir-193-P1c_5p

mirBase accession

MIMAT0019157

Sequence

0- CGGGAUUUGAUUGAUCAGUUCA -22

Get sequence

Co-mature sequence

Sko-Mir-193-P1c_3p

mirBase accession

MIMAT0009635

Sequence

35- AACUGGCCUUUUAAGUCCCGCA -57

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