Mir-193-P1a

MirGeneDB ID

Ami-Mir-193-P1a

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-193b

Paralogues

Ami-Mir-193-P1b Ami-Mir-193-P2a Ami-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Bta-Mir-193-P1a Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cfa-Mir-193-P1a Cja-Mir-193-P1a Cli-Mir-193-P1a Cmi-Mir-193-P1a Cpi-Mir-193-P1a Cpo-Mir-193-P1a Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dno-Mir-193-P1a Dpu-Mir-193-P1 Dre-Mir-193-P1a Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Eca-Mir-193-P1a Esc-Mir-193-P1 Ete-Mir-193-P1a Gga-Mir-193-P1a Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1a Isc-Mir-193-P1 Laf-Mir-193-P1a Lch-Mir-193-P1a Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1a Mdo-Mir-193-P1a Mgi-Mir-193-P1 Mml-Mir-193-P1a Mmr-Mir-193-P1a Mmu-Mir-193-P1a Mom-Mir-193-P1 Mun-Mir-193-P1a Npo-Mir-193-P1 Oan-Mir-193-P1a Obi-Mir-193-P1 Ocu-Mir-193-P1a Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1a Pau-Mir-193-P1 Pbv-Mir-193-P1a Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1a Rph-Mir-193-P1 Sha-Mir-193-P1a Snu-Mir-193-P1 Spt-Mir-193-P1a Sto-Mir-193-P1a Tca-Mir-193-P1 Tgu-Mir-193-P1a War-Mir-193-P1 Xbo-Mir-193-P1 Xla-Mir-193-P1a3 Xla-Mir-193-P1a4 Xtr-Mir-193-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017711568.1: 5490786-5490844 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-193-P1a)

Mir-193-P2a NW_017711568.1: 5484164-5484224 [-] UCSC
Mir-193-P1a NW_017711568.1: 5490786-5490844 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UUAACCCUCUGAAAGUUGUGGUUCCAGAGUCGGGGUUUUGGGGGCAAGAUGAGCUUAUGUUUUAUCCAACUGGCCCACAAAGUCCCGCUUUUGGUGGUCACUUUGUUCUGCAAAAGAAA

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Structure

        10         20         30        40        50         
UUAACCCUCUGAAAGUU-   GU -|     U    GU    G    A  A  AGCUUAU 
                  GUG  U CCAGAG CGGG  UUUG GGGC AG UG       \
                  CAC  G GGUUUU GCCC  AAAC CCCG UC AC       G
AAAGAAAACGUCUUGUUU   UG U^     C    UG    A    G  A  CUAUUUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Star sequence

Ami-Mir-193-P1a_5p*

mirBase accession

MIMAT0038210

Sequence

0- CGGGGUUUUGGGGGCAAGAUGA -22

Get sequence

Mature sequence

Ami-Mir-193-P1a_3p

mirBase accession

MIMAT0038211

Sequence

37- AACUGGCCCACAAAGUCCCGCU -59

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