MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-193-P1a

Family name MIR-193 (all species)
Seed ACUGGCC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-193b
Paralogues Ami-Mir-193-P1b  Ami-Mir-193-P2a  Ami-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Bge-Mir-193-P1  Bta-Mir-193-P1a  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cgi-Mir-193-P1  Cli-Mir-193-P1a  Cmi-Mir-193-P1a  Cpi-Mir-193-P1a  Cpo-Mir-193-P1a  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dpu-Mir-193-P1  Dre-Mir-193-P1a  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Esc-Mir-193-P1  Ete-Mir-193-P1a  Gga-Mir-193-P1a  Hme-Mir-193-P1  Hsa-Mir-193-P1a  Isc-Mir-193-P1  Lch-Mir-193-P1a  Lgi-Mir-193-P1  Loc-Mir-193-P1a  Mdo-Mir-193-P1a  Mml-Mir-193-P1a  Mmu-Mir-193-P1a  Mun-Mir-193-P1a  Npo-Mir-193-P1  Oan-Mir-193-P1a  Obi-Mir-193-P1  Ocu-Mir-193-P1a  Ovu-Mir-193-P1  Pbv-Mir-193-P1a  Pma-Mir-193-P1  Pmi-Mir-193-P1  Rno-Mir-193-P1a  Sha-Mir-193-P1a  Spt-Mir-193-P1a  Sto-Mir-193-P1a  Tca-Mir-193-P1  Tgu-Mir-193-P1a  Xbo-Mir-193-P1  Xla-Mir-193-P1a3  Xla-Mir-193-P1a4  Xtr-Mir-193-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711568.1: 5490786-5490844 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-193-P1a)		 Mir-193-P2a NW_017711568.1: 5484164-5484224 [-] UCSC
Mir-193-P1a NW_017711568.1: 5490786-5490844 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UUAACCCUCUGAAAGUUGUGGUUCCAGAGUCGGGGUUUUGGGGGCAAGAUGAGCUUAUGUUUUAUCCAACUGGCCCACAAAGUCCCGCUUUUGGUGGUCACUUUGUUCUGCAAAAGAAA
Get precursor sequence
Structure
        10         20         30        40        50         
UUAACCCUCUGAAAGUU-   GU -|     U    GU    G    A  A  AGCUUAU 
                  GUG  U CCAGAG CGGG  UUUG GGGC AG UG       \
                  CAC  G GGUUUU GCCC  AAAC CCCG UC AC       G
AAAGAAAACGUCUUGUUU   UG U^     C    UG    A    G  A  CUAUUUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Star sequence

Ami-Mir-193-P1a_5p*
mirBase accessionMIMAT0038210
Sequence 
0- CGGGGUUUUGGGGGCAAGAUGA -22
Get sequence
Mature sequence

Ami-Mir-193-P1a_3p
mirBase accessionMIMAT0038211
Sequence 
37- AACUGGCCCACAAAGUCCCGCU -59
Get sequence