MirGeneDB 3.0

MirGeneDB ID

Mmu-Mir-193-P1a

Family name MIR-193 (all species)
Seed ACUGGCC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-193b
Paralogues Mmu-Mir-193-P1b  Mmu-Mir-193-P2a  Mmu-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Aga-Mir-193-P1  Ami-Mir-193-P1a  Bge-Mir-193-P1  Bta-Mir-193-P1a  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cja-Mir-193-P1a  Cli-Mir-193-P1a  Cmi-Mir-193-P1a  Cpi-Mir-193-P1a  Cpo-Mir-193-P1a  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dpu-Mir-193-P1  Dre-Mir-193-P1a  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Eba-Mir-193-P1  Eca-Mir-193-P1a  Esc-Mir-193-P1  Ete-Mir-193-P1a  Gga-Mir-193-P1a  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Hsa-Mir-193-P1a  Isc-Mir-193-P1  Laf-Mir-193-P1a  Lch-Mir-193-P1a  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Loc-Mir-193-P1a  Mdo-Mir-193-P1a  Mgi-Mir-193-P1  Mml-Mir-193-P1a  Mmr-Mir-193-P1a  Mom-Mir-193-P1  Mun-Mir-193-P1a  Npo-Mir-193-P1  Oan-Mir-193-P1a  Obi-Mir-193-P1  Ocu-Mir-193-P1a  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pab-Mir-193-P1a  Pau-Mir-193-P1  Pbv-Mir-193-P1a  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rno-Mir-193-P1a  Rph-Mir-193-P1  Sha-Mir-193-P1a  Snu-Mir-193-P1  Spt-Mir-193-P1a  Sto-Mir-193-P1a  Tca-Mir-193-P1  Tgu-Mir-193-P1a  War-Mir-193-P1  Xbo-Mir-193-P1  Xla-Mir-193-P1a3  Xla-Mir-193-P1a4  Xtr-Mir-193-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(mm10)
chr16: 13449533-13449591 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1a)
Mir-193-P1a chr16: 13449533-13449591 [+] UCSC Ensembl
Mir-193-P2a chr16: 13453855-13453915 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAGGCUCUGGAGGCGGUGGGCCCAGAAUCGGGGUUUUGAGGGCGAGAUGAGUUUGUGUUUUAUCCAACUGGCCCACAAAGUCCCGCUUUUGGGGUCAUCCUAACAGCAAAGGAUUCA
Get precursor sequence
Structure
        10          20        30        40        50         
AAGAGGCUCUGGAGGCG--|   G       U    GU    A    G  A  AGUUUGU 
                   GUGG CCCAGAA CGGG  UUUG GGGC AG UG       \
                   UACU GGGUUUU GCCC  AAAC CCCG UC AC       G
ACUUAGGAAACGACAAUCC^   G       C    UG    A    G  A  CUAUUUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-193-P1a_5p*

mirBase accessionMIMAT0017271
Sequence
0- CGGGGUUUUGAGGGCGAGAUGA -22
Get sequence
Proposed targets TargetScanVert: mmu-miR-193b-5p
miRDB: MIMAT0017271
Mature sequence

Mmu-Mir-193-P1a_3p

mirBase accessionMIMAT0004859
Sequence
37- AACUGGCCCACAAAGUCCCGCU -59
Get sequence
Proposed targets microrna.org: MIMAT0004859
TargetScanVert: mmu-miR-193b-3p
miRDB: MIMAT0004859