Mir-193-P1b

MirGeneDB ID

Cpo-Mir-193-P1b

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-193a

Paralogues

Cpo-Mir-193-P1a Cpo-Mir-193-P2a Cpo-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aca-Mir-193-P1b Aga-Mir-193-P1 Ami-Mir-193-P1b Bge-Mir-193-P1 Bta-Mir-193-P1b Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cfa-Mir-193-P1b Cja-Mir-193-P1b Cmi-Mir-193-P1b Cpi-Mir-193-P1b Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dno-Mir-193-P1b Dpu-Mir-193-P1 Dre-Mir-193-P1b1 Dre-Mir-193-P1b2 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Eca-Mir-193-P1b Esc-Mir-193-P1 Ete-Mir-193-P1b Gga-Mir-193-P1b Gja-Mir-193-P1b Gmo-Mir-193-P1b2 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1b Isc-Mir-193-P1 Laf-Mir-193-P1b Lch-Mir-193-P1b Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1b Loc-Mir-193-P1b-as Mal-Mir-193-P1b2 Mdo-Mir-193-P1b Mgi-Mir-193-P1 Mml-Mir-193-P1b Mmr-Mir-193-P1b Mmu-Mir-193-P1b Mom-Mir-193-P1 Mun-Mir-193-P1b Neu-Mir-193-P1b Npo-Mir-193-P1 Oan-Mir-193-P1b Obi-Mir-193-P1 Ocu-Mir-193-P1b Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1b Pau-Mir-193-P1 Pbv-Mir-193-P1b Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1b Rph-Mir-193-P1 Sha-Mir-193-P1b Snu-Mir-193-P1 Spt-Mir-193-P1b Sto-Mir-193-P1b Tca-Mir-193-P1 Tgu-Mir-193-P1b Tni-Mir-193-P1b2 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(cavPor3)

scaffold_32: 15064360-15064415 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-193-P1b)

Mir-193-P2b scaffold_32: 15051644-15051704 [-] UCSC
Mir-193-P1b scaffold_32: 15064360-15064415 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CGAACUCCGAGGCGGACGGGAGCUGAGGGCUGGGUCUUUGCGGGCGAGAUGAGGGUGUCGGUUCAACUGGCCUACAAAGUCCCAGUCCUCGGCCCCCAGGACCGGCGUCUCCUCCG

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Structure

        10          20        30        40        50       
CGAACUCCGAGGCGGAC--|  A             U     CG   G  A   GGGU 
                   GGG GCUGAGGGCUGGG CUUUG  GGC AG UGA    G
                   CCC CGGCUCCUGACCC GAAAC  CCG UC ACU    U
GCCUCCUCUGCGGCCAGGA^  C             U     AU   G  A   UGGC 
    110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-193-P1b_5p*

mirBase accession

MIMAT0047070

Sequence

0- UGGGUCUUUGCGGGCGAGAUGA -22

Get sequence

Mature sequence

Cpo-Mir-193-P1b_3p

mirBase accession

MIMAT0047071

Sequence

34- AACUGGCCUACAAAGUCCCAGU -56

Get sequence