Mir-193-P1b

MirGeneDB ID

Bta-Mir-193-P1b

Family name

MIR-193 (all species)

Seed

GGGUCUU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-193a

Paralogues

Bta-Mir-193-P1a Bta-Mir-193-P2a Bta-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aca-Mir-193-P1b Aga-Mir-193-P1 Ami-Mir-193-P1b Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cfa-Mir-193-P1b Cja-Mir-193-P1b Cmi-Mir-193-P1b Cpi-Mir-193-P1b Cpo-Mir-193-P1b Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dno-Mir-193-P1b Dpu-Mir-193-P1 Dre-Mir-193-P1b1 Dre-Mir-193-P1b2 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Eca-Mir-193-P1b Esc-Mir-193-P1 Ete-Mir-193-P1b Gga-Mir-193-P1b Gja-Mir-193-P1b Gmo-Mir-193-P1b2 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1b Isc-Mir-193-P1 Laf-Mir-193-P1b Lch-Mir-193-P1b Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1b Loc-Mir-193-P1b-as Mal-Mir-193-P1b2 Mdo-Mir-193-P1b Mgi-Mir-193-P1 Mml-Mir-193-P1b Mmr-Mir-193-P1b Mmu-Mir-193-P1b Mom-Mir-193-P1 Mun-Mir-193-P1b Neu-Mir-193-P1b Npo-Mir-193-P1 Oan-Mir-193-P1b Obi-Mir-193-P1 Ocu-Mir-193-P1b Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1b Pau-Mir-193-P1 Pbv-Mir-193-P1b Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1b Rph-Mir-193-P1 Sha-Mir-193-P1b Snu-Mir-193-P1 Spt-Mir-193-P1b Sto-Mir-193-P1b Tca-Mir-193-P1 Tgu-Mir-193-P1b Tni-Mir-193-P1b2 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037346.1: 18474472-18474527 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1b)

Mir-193-P2b NC_037346.1: 18461524-18461585 [-] UCSC Ensembl
Mir-193-P1b NC_037346.1: 18474472-18474527 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUAAUCCGAGACGCGUGGGAGCUGAGAGCUGGGUCUUUGCGGGCGAGAUGAAGGUGUCGGUUCAACUGGCCUACAAAGUCCCAGUCCUCGGCCCCCAGGACCGACGGCUCCUCCU

Get precursor sequence

Structure

        10          20        30        40        50       
CCUAAUCCGAGACGCGU--|  A      AG     U     CG   G  A   AGGU 
                   GGG GCUGAG  CUGGG CUUUG  GGC AG UGA    G
                   CCC CGGCUC  GACCC GAAAC  CCG UC ACU    U
UCCUCCUCGGCAGCCAGGA^  C      CU     U     AU   G  A   UGGC 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-193-P1b_5p

mirBase accession

MIMAT0003794

Sequence

0- UGGGUCUUUGCGGGCGAGAUGA -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-193a-5p

Co-mature sequence

Bta-Mir-193-P1b_3p

mirBase accession

MIMAT0003795

Sequence

34- AACUGGCCUACAAAGUCCCAGU -56

Get sequence

Proposed targets

TargetScanVert: bta-miR-193a-3p