MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-193-P1b2

Family name MIR-193 (all species)
Seed ACUGGCC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-193
Paralogues Tni-Mir-193-P2b2 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1b  Ami-Mir-193-P1b  Bge-Mir-193-P1  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cmi-Mir-193-P1b  Cpi-Mir-193-P1b  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1b2  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Esc-Mir-193-P1  Ete-Mir-193-P1b  Gga-Mir-193-P1b  Gja-Mir-193-P1b  Gmo-Mir-193-P1b2  Hme-Mir-193-P1  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lch-Mir-193-P1b  Lgi-Mir-193-P1  Loc-Mir-193-P1b  Loc-Mir-193-P1b-as  Mal-Mir-193-P1b2  Mdo-Mir-193-P1b  Mml-Mir-193-P1b  Mmu-Mir-193-P1b  Mun-Mir-193-P1b  Npo-Mir-193-P1  Oan-Mir-193-P1b  Obi-Mir-193-P1  Ocu-Mir-193-P1b  Ovu-Mir-193-P1  Pbv-Mir-193-P1b  Pma-Mir-193-P1  Pmi-Mir-193-P1  Rno-Mir-193-P1b  Sha-Mir-193-P1b  Spt-Mir-193-P1b  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1b  Xbo-Mir-193-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 38919584-38919642 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1b2)		 Mir-193-P1b2 Un_random: 38919584-38919642 [+] UCSC Ensembl
Mir-193-P2b2 Un_random: 38921292-38921353 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGACAAGGAUGAUGUGUGUGUCAGAAGCUGGGUCUUUGCGGGCAAGGUGAGUCCUCAGUUUGUUCAACUGGCCUACAAAGUCCCAGUGUCUGGCUCACGUGACCUCCGAGUGAUAGA
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Structure
        10          20        30        40        50         
AUUGACAAGGAUGAUGU--|  U      A      U     CG   A  G   GUCCUC 
                   GUG GUCAGA GCUGGG CUUUG  GGC AG UGA      \
                   CAC CGGUCU UGACCC GAAAC  CCG UC ACU      A
AGAUAGUGAGCCUCCAGUG^  U      G      U     AU   G  A   UGUUUG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-193-P1b2_5p*
mirBase accessionNone
Sequence 
0- UGGGUCUUUGCGGGCAAGGUGA -22
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Mature sequence

Tni-Mir-193-P1b2_3p
mirBase accessionMIMAT0002970
Sequence 
37- AACUGGCCUACAAAGUCCCAGU -59
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