MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-193-P1b2

Family name MIR-193 (all species)
Seed ACUGGCC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-193a-2
Paralogues Dre-Mir-193-P1a  Dre-Mir-193-P1b1  Dre-Mir-193-P2a  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1b  Ami-Mir-193-P1b  Bge-Mir-193-P1  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cmi-Mir-193-P1b  Cpi-Mir-193-P1b  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Esc-Mir-193-P1  Ete-Mir-193-P1b  Gga-Mir-193-P1b  Gja-Mir-193-P1b  Gmo-Mir-193-P1b2  Hme-Mir-193-P1  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lch-Mir-193-P1b  Lgi-Mir-193-P1  Loc-Mir-193-P1b  Loc-Mir-193-P1b-as  Mal-Mir-193-P1b2  Mdo-Mir-193-P1b  Mml-Mir-193-P1b  Mmu-Mir-193-P1b  Mun-Mir-193-P1b  Npo-Mir-193-P1  Oan-Mir-193-P1b  Obi-Mir-193-P1  Ocu-Mir-193-P1b  Ovu-Mir-193-P1  Pbv-Mir-193-P1b  Pma-Mir-193-P1  Pmi-Mir-193-P1  Rno-Mir-193-P1b  Sha-Mir-193-P1b  Spt-Mir-193-P1b  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1b  Tni-Mir-193-P1b2  Xbo-Mir-193-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr6: 18517992-18518050 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1b2)
Mir-193-P2b2 chr6: 18516330-18516391 [-] UCSC Ensembl
Mir-193-P1b2 chr6: 18517992-18518050 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAGUAACACUUGAGAGUGUGUCAGAGGCUGGGUCUUUGCGGGCAAGGUGAGUUUUCCUUUCAUUCAACUGGCCUACAAAGUCCCAGUUUUCGGCCCAUGUGACCAUCUCUGUCAAUU
Get precursor sequence
Structure
        10          20        30        40        50         
UUCAGUAACACUUGAGA--|  U   AG        U     CG   A  G   GUUUUC 
                   GUG GUC  AGGCUGGG CUUUG  GGC AG UGA      \
                   UAC CGG  UUUGACCC GAAAC  CCG UC ACU      C
UUAACUGUCUCUACCAGUG^  C   CU        U     AU   G  A   UACUUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-193-P1b2_5p*

mirBase accessionMIMAT0031981
Sequence
0- UGGGUCUUUGCGGGCAAGGUGA -22
Get sequence
Mature sequence

Dre-Mir-193-P1b2_3p

mirBase accessionMIMAT0001856
Sequence
37- AACUGGCCUACAAAGUCCCAGU -59
Get sequence
Proposed targets TargetScanFish: dre-miR-193a