Mir-193-P1b

MirGeneDB ID

Hsa-Mir-193-P1b

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-193a

Paralogues

Hsa-Mir-193-P1a Hsa-Mir-193-P2a Hsa-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aca-Mir-193-P1b Aga-Mir-193-P1 Ami-Mir-193-P1b Bge-Mir-193-P1 Bta-Mir-193-P1b Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cfa-Mir-193-P1b Cja-Mir-193-P1b Cmi-Mir-193-P1b Cpi-Mir-193-P1b Cpo-Mir-193-P1b Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dno-Mir-193-P1b Dpu-Mir-193-P1 Dre-Mir-193-P1b1 Dre-Mir-193-P1b2 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Eca-Mir-193-P1b Esc-Mir-193-P1 Ete-Mir-193-P1b Gga-Mir-193-P1b Gja-Mir-193-P1b Gmo-Mir-193-P1b2 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Laf-Mir-193-P1b Lch-Mir-193-P1b Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1b Loc-Mir-193-P1b-as Mal-Mir-193-P1b2 Mdo-Mir-193-P1b Mgi-Mir-193-P1 Mml-Mir-193-P1b Mmr-Mir-193-P1b Mmu-Mir-193-P1b Mom-Mir-193-P1 Mun-Mir-193-P1b Neu-Mir-193-P1b Npo-Mir-193-P1 Oan-Mir-193-P1b Obi-Mir-193-P1 Ocu-Mir-193-P1b Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1b Pau-Mir-193-P1 Pbv-Mir-193-P1b Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1b Rph-Mir-193-P1 Sha-Mir-193-P1b Snu-Mir-193-P1 Spt-Mir-193-P1b Sto-Mir-193-P1b Tca-Mir-193-P1 Tgu-Mir-193-P1b Tni-Mir-193-P1b2 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr17: 31560016-31560071 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1b)

Mir-193-P1b chr17: 31560016-31560071 [+] UCSC Ensembl
Mir-193-P2b chr17: 31575438-31575499 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCCGAACUCCGAGGAUGGGAGCUGAGGGCUGGGUCUUUGCGGGCGAGAUGAGGGUGUCGGAUCAACUGGCCUACAAAGUCCCAGUUCUCGGCCCCCGGGACCAGCGUCUUCUCCC

Get precursor sequence

Structure

        10          20        30        40        50       
CCCCGAACUCCGAGGAU--|  A             U     CG   G  A   GGGU 
                   GGG GCUGAGGGCUGGG CUUUG  GGC AG UGA    G
                   CCC CGGCUCUUGACCC GAAAC  CCG UC ACU    U
CCCUCUUCUGCGACCAGGG^  C             U     AU   G  A   AGGC 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-193-P1b_5p*

mirBase accession

MIMAT0004614

Sequence

0- UGGGUCUUUGCGGGCGAGAUGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004614
TargetScanVert: hsa-miR-193a-5p
TargetMiner: hsa-miR-193a-5p
miRDB: MIMAT0004614

Mature sequence

Hsa-Mir-193-P1b_3p

mirBase accession

MIMAT0000459

Sequence

34- AACUGGCCUACAAAGUCCCAGU -56

Get sequence

Proposed targets

microrna.org: MIMAT0000459
TargetScanVert: hsa-miR-193a-3p
TargetMiner: hsa-miR-193a-3p
miRDB: MIMAT0000459