MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-193-P1b-as

Family name MIR-193 (all species)
Seed CCUCGCC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-193-P1a  Loc-Mir-193-P1b  Loc-Mir-193-P2a  Loc-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1b  Ami-Mir-193-P1b  Bge-Mir-193-P1  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1b  Cgi-Mir-193-P1  Cmi-Mir-193-P1b  Cpi-Mir-193-P1b  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1b1  Dre-Mir-193-P1b2  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Esc-Mir-193-P1  Ete-Mir-193-P1b  Gga-Mir-193-P1b  Gja-Mir-193-P1b  Gmo-Mir-193-P1b2  Hme-Mir-193-P1  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Lch-Mir-193-P1b  Lgi-Mir-193-P1  Mal-Mir-193-P1b2  Mdo-Mir-193-P1b  Mml-Mir-193-P1b  Mmu-Mir-193-P1b  Mun-Mir-193-P1b  Npo-Mir-193-P1  Oan-Mir-193-P1b  Obi-Mir-193-P1  Ocu-Mir-193-P1b  Ovu-Mir-193-P1  Pbv-Mir-193-P1b  Pma-Mir-193-P1  Pmi-Mir-193-P1  Rno-Mir-193-P1b  Sha-Mir-193-P1b  Spt-Mir-193-P1b  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1b  Tni-Mir-193-P1b2  Xbo-Mir-193-P1 
Node of Origin (locus) L. oculatus
Node of Origin (family) Bilateria
Genome context
(LepOcu1)
LG10: 41575613-41575675 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGCCGCGCCGGUCGGGCGCCCCAGGGACUGGGACUUUGUAGGGCCAGUUGAGAGAGGGGAACAGACCUCACCUCGCCCGCAAAGACCCAGCCCCUGUCGCGCACACACUCGCCGCAGGGUC
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Structure
        10          20        30        40        50        60 
GGGGCCGCGCCGGUCGG--|   CC     A     A      A    C  U   GAGAGGG 
                   GCGC  CAGGG CUGGG CUUUGU GGGC AG UGA       G
                   CGCG  GUCCC GACCC GAAACG CCCG UC ACU       A
CUGGGACGCCGCUCACACA^   CU     C     A      -    C  C   CCAGACA 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-193-P1b-as_5p*

mirBase accessionNone
Sequence
0- UGGGACUUUGUAGGGCCAGUUGA -23
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Mature sequence

Loc-Mir-193-P1b-as_3p

mirBase accessionNone
Sequence
41- ACCUCGCCCGCAAAGACCCAGC -63
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