| MirGeneDB ID | Loc-Mir-193-P2a |
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| Family name |
MIR-193 (all species) |
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| Seed |
AAUGCCC |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-193-P1a
Loc-Mir-193-P1b
Loc-Mir-193-P1b-as
Loc-Mir-193-P2b
|
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| Orthologues |
Ami-Mir-193-P2a
Bge-Mir-193-P2
Bta-Mir-193-P2a
Cbr-Mir-193-P2-v1
Cbr-Mir-193-P2-v2
Cel-Mir-193-P2-v1
Cel-Mir-193-P2-v2
Cfa-Mir-193-P2a
Cgi-Mir-193-P2
Cli-Mir-193-P2a
Cmi-Mir-193-P2a
Cpi-Mir-193-P2a
Cpo-Mir-193-P2a
Cte-Mir-193-P2
Dno-Mir-193-P2a
Dre-Mir-193-P2a
Ebu-Mir-193-P2
Ete-Mir-193-P2a
Gga-Mir-193-P2a
Hme-Mir-193-P2
Hsa-Mir-193-P2a
Lch-Mir-193-P2a
Lgi-Mir-193-P2
Mdo-Mir-193-P2a
Mml-Mir-193-P2a
Mmu-Mir-193-P2a
Mun-Mir-193-P2a
Oan-Mir-193-P2a
Ocu-Mir-193-P2a
Pbv-Mir-193-P2a
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Rno-Mir-193-P2a
Sha-Mir-193-P2a
Sko-Mir-193-P2
Spt-Mir-193-P2a
Spu-Mir-193-P2
Sto-Mir-193-P2a
Tca-Mir-193-P2
Tgu-Mir-193-P2a
Xbo-Mir-193-P2
Xla-Mir-193-P2a3
Xla-Mir-193-P2a4
Xtr-Mir-193-P2a
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Bilateria
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Genome context
(LepOcu1) |
LG13: 139122-139182 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAAUGUGUUUAUUUACCGCAGGGAAAAUGAGGGGCUUUUGGGGGCAGUUGUGUUUCAGUUUCACUAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAGUUAUCAGCAAUGCAGAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGAAUGUGUUUAUUUACC--| AA GC G UUUCAGU
GCAGGG AAUGAGGG UUUUGGGGGCA UUGUG \
CGUUCU UUAUUCCU AAAAUCCCCGU AAUAC U
GAAGACGUAACGACUAUUGA^ CG A- - UAUCACU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | A "T" is genomically encoded at the 3' end of the 3p arm but it is assumed that the 3p arm is post-transcriptionally modified like its orthologues in other vertebrates. |
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-193-P2a_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGGCUUUUGGGGGCAGUUGUG -23
Get sequence
|
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| Mature sequence |
Loc-Mir-193-P2a_3p |
| mirBase accession | None |
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| Sequence |
40- UAAUGCCCCUAAAAAUCCUUA -61
Get sequence
|
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