MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-193-P2-v1

Family name MIR-193 (all species)
Seed AAUGCCC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-786
Paralogues Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cel-Mir-193-P2-v2 
Orthologues Aca-Mir-193-P2b  Ami-Mir-193-P2a  Ami-Mir-193-P2b  Bge-Mir-193-P2  Bta-Mir-193-P2a  Bta-Mir-193-P2b  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cfa-Mir-193-P2a  Cfa-Mir-193-P2b  Cgi-Mir-193-P2  Cli-Mir-193-P2a  Cli-Mir-193-P2b  Cmi-Mir-193-P2a  Cmi-Mir-193-P2b  Cpi-Mir-193-P2a  Cpi-Mir-193-P2b  Cpo-Mir-193-P2a  Cpo-Mir-193-P2b  Csc-Mir-193-P2v  Cte-Mir-193-P2  Dno-Mir-193-P2a  Dno-Mir-193-P2b  Dre-Mir-193-P2a  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2  Ebu-Mir-193-P2  Efe-Mir-193-P2c-v1  Efe-Mir-193-P2c-v2  Efe-Mir-193-P2d-v1  Efe-Mir-193-P2d-v2  Efe-Mir-193-P2e-v1  Efe-Mir-193-P2e-v2  Efe-Mir-193-P2f-v1  Efe-Mir-193-P2f-v2  Ete-Mir-193-P2a  Ete-Mir-193-P2b  Gga-Mir-193-P2a  Gga-Mir-193-P2b  Gja-Mir-193-P2b  Gmo-Mir-193-P2b2  Hme-Mir-193-P2  Hsa-Mir-193-P2a  Hsa-Mir-193-P2b  Lan-Mir-193-P2p  Lan-Mir-193-P2q  Lch-Mir-193-P2a  Lch-Mir-193-P2b  Lgi-Mir-193-P2  Loc-Mir-193-P2a  Loc-Mir-193-P2b  Lpo-Mir-193-P2n  Lpo-Mir-193-P2o  Lpo-Mir-193-P2r  Mal-Mir-193-P2b2  Mdo-Mir-193-P2a  Mml-Mir-193-P2a  Mml-Mir-193-P2b  Mmu-Mir-193-P2a  Mmu-Mir-193-P2b  Mun-Mir-193-P2a  Mun-Mir-193-P2b  Oan-Mir-193-P2a  Oan-Mir-193-P2b  Ocu-Mir-193-P2a  Ocu-Mir-193-P2b  Pbv-Mir-193-P2a  Pbv-Mir-193-P2b  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Rno-Mir-193-P2a  Rno-Mir-193-P2b  Sha-Mir-193-P2a  Sha-Mir-193-P2b  Sko-Mir-193-P2  Spt-Mir-193-P2a  Spt-Mir-193-P2b  Spu-Mir-193-P2  Sto-Mir-193-P2a  Sto-Mir-193-P2b  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Tgu-Mir-193-P2b  Tni-Mir-193-P2b2  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ce11)		 chrX: 7882766-7882826 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P2-v1)		 Mir-193-P1-v1 chrX: 7882643-7882703 [+] UCSC Ensembl
Mir-193-P1-v2 chrX: 7882643-7882703 [+] UCSC Ensembl
Mir-193-P2-v1 chrX: 7882766-7882826 [+] UCSC Ensembl
Mir-193-P2-v2 chrX: 7882766-7882826 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUAAAGUAAGUAAAGGGAUAGUUCCCGAUCGAAUAUCAGUUGGGGUAUUUACAAAAAGACAAAAUUGUAAUGCCCUGAAUGAUGUUCAAUCGGUGAUGAAUCUCAUUUUUUAUUGUGUUU
Get precursor sequence
Structure
        10         20         30        40        50        60
AGUAAAGUAAGUAAAGG-   A-| UC     C        G UG       U   AAAAG 
                  GAU  GU  CCGAU GAAUAUCA U  GGGUAUU ACA     A
                  CUA  UA  GGCUA CUUGUAGU A  CCCGUAA UGU     C
UUUGUGUUAUUUUUUACU   AG^ GU     A        A GU       -   UAAAA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-193-P2-v1_5p*
mirBase accessionMIMAT0015239
Sequence 
0- CGAAUAUCAGUUGGGGUAUUUACA -24
Get sequence
Proposed targets microrna.org: MIMAT0015239
Mature sequence

Cel-Mir-193-P2-v1_3p
mirBase accessionMIMAT0004221
Sequence 
38- UAAUGCCCUGAAUGAUGUUCAAU -61
Get sequence
Proposed targets microrna.org: MIMAT0004221
TargetScanWorm: cel-miR-786