Mir-193-P2-v1

MirGeneDB ID

Cel-Mir-193-P2-v1

Family name

MIR-193 (all species)

Seed

AAUGCCC

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-786

Paralogues

Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cel-Mir-193-P2-v2

Orthologues

Aca-Mir-193-P2b Ami-Mir-193-P2a Ami-Mir-193-P2b Bge-Mir-193-P2 Bta-Mir-193-P2a Bta-Mir-193-P2b Cbr-Mir-193-P2-v1 Cbr-Mir-193-P2-v2 Cfa-Mir-193-P2a Cfa-Mir-193-P2b Cja-Mir-193-P2a Cja-Mir-193-P2b Cli-Mir-193-P2a Cli-Mir-193-P2b Cmi-Mir-193-P2a Cmi-Mir-193-P2b Cpi-Mir-193-P2a Cpi-Mir-193-P2b Cpo-Mir-193-P2a Cpo-Mir-193-P2b Csc-Mir-193-P2v Cte-Mir-193-P2 Dgr-Mir-193-P2 Dlo-Mir-193-P2 Dno-Mir-193-P2a Dno-Mir-193-P2b Dre-Mir-193-P2a Dre-Mir-193-P2b1 Dre-Mir-193-P2b2 Ebu-Mir-193-P2 Eca-Mir-193-P2a Eca-Mir-193-P2b Efe-Mir-193-P2c-v1 Efe-Mir-193-P2c-v2 Efe-Mir-193-P2d-v1 Efe-Mir-193-P2d-v2 Efe-Mir-193-P2e-v1 Efe-Mir-193-P2e-v2 Efe-Mir-193-P2f-v1 Efe-Mir-193-P2f-v2 Ete-Mir-193-P2a Ete-Mir-193-P2b Gga-Mir-193-P2a Gga-Mir-193-P2b Gja-Mir-193-P2b Gmo-Mir-193-P2b2 Hme-Mir-193-P2 Hru-Mir-193-P2 Hsa-Mir-193-P2a Hsa-Mir-193-P2b Laf-Mir-193-P2a Laf-Mir-193-P2b Lan-Mir-193-P2p Lan-Mir-193-P2q Lch-Mir-193-P2a Lch-Mir-193-P2b Lgi-Mir-193-P2 Llo-Mir-193-P2-v1 Llo-Mir-193-P2-v2 Loc-Mir-193-P2a Loc-Mir-193-P2b Lpo-Mir-193-P2n Lpo-Mir-193-P2o Lpo-Mir-193-P2r Mal-Mir-193-P2b2 Mdo-Mir-193-P2a Mgi-Mir-193-P2 Mml-Mir-193-P2a Mml-Mir-193-P2b Mmr-Mir-193-P2a Mmr-Mir-193-P2b Mmu-Mir-193-P2a Mmu-Mir-193-P2b Mun-Mir-193-P2a Mun-Mir-193-P2b Neu-Mir-193-P2a Neu-Mir-193-P2b Oan-Mir-193-P2a Oan-Mir-193-P2b Ocu-Mir-193-P2a Ocu-Mir-193-P2b Pab-Mir-193-P2a Pab-Mir-193-P2b Pau-Mir-193-P2 Pbv-Mir-193-P2a Pbv-Mir-193-P2b Pdu-Mir-193-P2 Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Pve-Mir-193-P2 Rno-Mir-193-P2a Rno-Mir-193-P2b Rph-Mir-193-P2 Sha-Mir-193-P2a Sha-Mir-193-P2b Sko-Mir-193-P2 Snu-Mir-193-P2 Spt-Mir-193-P2a Spt-Mir-193-P2b Spu-Mir-193-P2 Sro-Mir-193-P2 Sto-Mir-193-P2a Sto-Mir-193-P2b Tca-Mir-193-P2 Tgu-Mir-193-P2a Tgu-Mir-193-P2b Tni-Mir-193-P2b2 Xbo-Mir-193-P2 Xla-Mir-193-P2a3 Xla-Mir-193-P2a4 Xtr-Mir-193-P2a

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(ce11)

chrX: 7882766-7882826 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P2-v1)

Mir-193-P1-v1 chrX: 7882643-7882703 [+] UCSC Ensembl
Mir-193-P1-v2 chrX: 7882643-7882703 [+] UCSC Ensembl
Mir-193-P2-v1 chrX: 7882766-7882826 [+] UCSC Ensembl
Mir-193-P2-v2 chrX: 7882766-7882826 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUAAAGUAAGUAAAGGGAUAGUUCCCGAUCGAAUAUCAGUUGGGGUAUUUACAAAAAGACAAAAUUGUAAUGCCCUGAAUGAUGUUCAAUCGGUGAUGAAUCUCAUUUUUUAUUGUGUUU

Get precursor sequence

Structure

        10         20         30        40        50        60
AGUAAAGUAAGUAAAGG-   A-| UC     C        G UG       U   AAAAG 
                  GAU  GU  CCGAU GAAUAUCA U  GGGUAUU ACA     A
                  CUA  UA  GGCUA CUUGUAGU A  CCCGUAA UGU     C
UUUGUGUUAUUUUUUACU   AG^ GU     A        A GU       -   UAAAA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Star sequence

Cel-Mir-193-P2-v1_5p*

mirBase accession

MIMAT0015239

Sequence

0- CGAAUAUCAGUUGGGGUAUUUACA -24

Get sequence

Proposed targets

microrna.org: MIMAT0015239

Mature sequence

Cel-Mir-193-P2-v1_3p

mirBase accession

MIMAT0004221

Sequence

38- UAAUGCCCUGAAUGAUGUUCAAU -61

Get sequence

Proposed targets

microrna.org: MIMAT0004221
TargetScanWorm: cel-miR-786