MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-193-P2b2

Family name MIR-193 (all species)
Seed AAUGCCC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-365
Paralogues Gmo-Mir-193-P1b2 
Orthologues Aca-Mir-193-P2b  Ami-Mir-193-P2b  Bge-Mir-193-P2  Bta-Mir-193-P2b  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2b  Cja-Mir-193-P2b  Cli-Mir-193-P2b  Cmi-Mir-193-P2b  Cpi-Mir-193-P2b  Cpo-Mir-193-P2b  Cte-Mir-193-P2  Dgr-Mir-193-P2  Dlo-Mir-193-P2  Dno-Mir-193-P2b  Dre-Mir-193-P2b2  Ebu-Mir-193-P2  Eca-Mir-193-P2b  Ete-Mir-193-P2b  Gga-Mir-193-P2b  Gja-Mir-193-P2b  Hme-Mir-193-P2  Hru-Mir-193-P2  Hsa-Mir-193-P2b  Laf-Mir-193-P2b  Lch-Mir-193-P2b  Lgi-Mir-193-P2  Llo-Mir-193-P2-v1  Llo-Mir-193-P2-v2  Loc-Mir-193-P2b  Mal-Mir-193-P2b2  Mgi-Mir-193-P2  Mml-Mir-193-P2b  Mmr-Mir-193-P2b  Mmu-Mir-193-P2b  Mun-Mir-193-P2b  Neu-Mir-193-P2b  Oan-Mir-193-P2b  Ocu-Mir-193-P2b  Pab-Mir-193-P2b  Pau-Mir-193-P2  Pbv-Mir-193-P2b  Pdu-Mir-193-P2  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Pve-Mir-193-P2  Rno-Mir-193-P2b  Rph-Mir-193-P2  Sha-Mir-193-P2b  Sko-Mir-193-P2  Snu-Mir-193-P2  Spt-Mir-193-P2b  Spu-Mir-193-P2  Sro-Mir-193-P2  Sto-Mir-193-P2b  Tca-Mir-193-P2  Tgu-Mir-193-P2b  Tni-Mir-193-P2b2  Xbo-Mir-193-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_4492: 289040-289102 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P2b2)		 Mir-193-P1b2 GeneScaffold_4492: 286379-286436 [+] UCSC Ensembl
Mir-193-P2b2 GeneScaffold_4492: 289040-289102 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGAGUGAGAAAAAGGCAGCAAGAAAAGUGAGGGACUUUUAGGGGCAGCUGUGUUUAAUUAACCCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAAUGGUCAACAAAUCUCCUGU
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Structure
        10          20        30        40        50        60  
AGAGAGUGAGAAAAAGGCA--|     AA        AC           GC    UUUAAUU 
                     GCAAGA  AGUGAGGG  UUUUAGGGGCA  UGUG       \
                     CGUUCU  UUAUUCCU  AAAAUCCCCGU  AUAC       A
UGUCCUCUAAACAACUGGUAA^     CG        A-           A-    UGACCCA 
 120       110       100        90         80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-193-P2b2_5p*
mirBase accessionMIMAT0044290
Sequence 
0- GAGGGACUUUUAGGGGCAGCUGUG -24
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Mature sequence

Gmo-Mir-193-P2b2_3p
mirBase accessionMIMAT0044291
Sequence 
41- UAAUGCCCCUAAAAAUCCUUAU -63
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