Mir-193-P2

MirGeneDB ID

Mgi-Mir-193-P2

Family name

MIR-193 (all species)

Seed

AAUGCCC

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-193-P1

Orthologues

Aca-Mir-193-P2b Ami-Mir-193-P2a Ami-Mir-193-P2b Bge-Mir-193-P2 Bta-Mir-193-P2a Bta-Mir-193-P2b Cbr-Mir-193-P2-v1 Cbr-Mir-193-P2-v2 Cel-Mir-193-P2-v1 Cel-Mir-193-P2-v2 Cfa-Mir-193-P2a Cfa-Mir-193-P2b Cja-Mir-193-P2a Cja-Mir-193-P2b Cli-Mir-193-P2a Cli-Mir-193-P2b Cmi-Mir-193-P2a Cmi-Mir-193-P2b Cpi-Mir-193-P2a Cpi-Mir-193-P2b Cpo-Mir-193-P2a Cpo-Mir-193-P2b Csc-Mir-193-P2v Cte-Mir-193-P2 Dgr-Mir-193-P2 Dlo-Mir-193-P2 Dno-Mir-193-P2a Dno-Mir-193-P2b Dre-Mir-193-P2a Dre-Mir-193-P2b1 Dre-Mir-193-P2b2 Ebu-Mir-193-P2 Eca-Mir-193-P2a Eca-Mir-193-P2b Efe-Mir-193-P2c-v1 Efe-Mir-193-P2c-v2 Efe-Mir-193-P2d-v1 Efe-Mir-193-P2d-v2 Efe-Mir-193-P2e-v1 Efe-Mir-193-P2e-v2 Efe-Mir-193-P2f-v1 Efe-Mir-193-P2f-v2 Ete-Mir-193-P2a Ete-Mir-193-P2b Gga-Mir-193-P2a Gga-Mir-193-P2b Gja-Mir-193-P2b Gmo-Mir-193-P2b2 Hme-Mir-193-P2 Hru-Mir-193-P2 Hsa-Mir-193-P2a Hsa-Mir-193-P2b Laf-Mir-193-P2a Laf-Mir-193-P2b Lan-Mir-193-P2p Lan-Mir-193-P2q Lch-Mir-193-P2a Lch-Mir-193-P2b Lgi-Mir-193-P2 Llo-Mir-193-P2-v1 Llo-Mir-193-P2-v2 Loc-Mir-193-P2a Loc-Mir-193-P2b Lpo-Mir-193-P2n Lpo-Mir-193-P2o Lpo-Mir-193-P2r Mal-Mir-193-P2b2 Mdo-Mir-193-P2a Mml-Mir-193-P2a Mml-Mir-193-P2b Mmr-Mir-193-P2a Mmr-Mir-193-P2b Mmu-Mir-193-P2a Mmu-Mir-193-P2b Mun-Mir-193-P2a Mun-Mir-193-P2b Neu-Mir-193-P2a Neu-Mir-193-P2b Oan-Mir-193-P2a Oan-Mir-193-P2b Ocu-Mir-193-P2a Ocu-Mir-193-P2b Pab-Mir-193-P2a Pab-Mir-193-P2b Pau-Mir-193-P2 Pbv-Mir-193-P2a Pbv-Mir-193-P2b Pdu-Mir-193-P2 Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Pve-Mir-193-P2 Rno-Mir-193-P2a Rno-Mir-193-P2b Rph-Mir-193-P2 Sha-Mir-193-P2a Sha-Mir-193-P2b Sko-Mir-193-P2 Snu-Mir-193-P2 Spt-Mir-193-P2a Spt-Mir-193-P2b Spu-Mir-193-P2 Sro-Mir-193-P2 Sto-Mir-193-P2a Sto-Mir-193-P2b Tca-Mir-193-P2 Tgu-Mir-193-P2a Tgu-Mir-193-P2b Tni-Mir-193-P2b2 Xbo-Mir-193-P2 Xla-Mir-193-P2a3 Xla-Mir-193-P2a4 Xtr-Mir-193-P2a

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold1144: 349158-349216 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGAAUUAGGACGAUCGGGUAUGCAGUUUGUGGGUUUCUAGGCGCAUUAUUUUCUAUUGUUUAUGAAAAUGCCCCCAGAAAUCCUAAAAAUUGUGUAUCCAAGUCAUCUAAUUAAUUU

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Structure

        10         20        30         40        50        60
GUGGAAUUAGGACGAUC-             GU-|       A  C     AUU   UAUU 
                  GGGUAUGCAGUUU   GGGUUUCU GG GCAUU   UUC    G
                  CCUAUGUGUUAAA   CCUAAAGA CC CGUAA   AAG    U
UUUAAUUAAUCUACUGAA             AAU^       C  C     ---   UAUU 
       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-193-P2_5p*

mirBase accession

None

Sequence

0- GUGGGUUUCUAGGCGCAUUAUUUUC -25

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Mature sequence

Mgi-Mir-193-P2_3p

mirBase accession

None

Sequence

37- AAAUGCCCCCAGAAAUCCUAAA -59

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