| MirGeneDB ID | Efe-Mir-193-P2f-v1 |
|---|
| Family name |
MIR-193 (all species) |
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| Seed |
AAUGCCC |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-193-P1n
Efe-Mir-193-P1o
Efe-Mir-193-P2c-v1
Efe-Mir-193-P2c-v2
Efe-Mir-193-P2d-v1
Efe-Mir-193-P2d-v2
Efe-Mir-193-P2e-v1
Efe-Mir-193-P2e-v2
Efe-Mir-193-P2f-v2
|
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| Orthologues |
Bge-Mir-193-P2
Cbr-Mir-193-P2-v1
Cbr-Mir-193-P2-v2
Cel-Mir-193-P2-v1
Cel-Mir-193-P2-v2
Cte-Mir-193-P2
Dgr-Mir-193-P2
Dlo-Mir-193-P2
Ebu-Mir-193-P2
Hme-Mir-193-P2
Hru-Mir-193-P2
Lgi-Mir-193-P2
Llo-Mir-193-P2-v1
Llo-Mir-193-P2-v2
Mgi-Mir-193-P2
Pau-Mir-193-P2
Pdu-Mir-193-P2
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Pve-Mir-193-P2
Rph-Mir-193-P2
Sko-Mir-193-P2
Snu-Mir-193-P2
Spu-Mir-193-P2
Sro-Mir-193-P2
Tca-Mir-193-P2
Xbo-Mir-193-P2
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Efe_combined) |
Efet.01.1370857: 57-119 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GAUUAAUUGGAUCAUUUGAACGGGUGUGAAACGGGAUCUCAGUGGGCAUUGUCUUCAGUGUUUGAAACAAGAAUGCCCUGUGAAAUCCUGUCUCUCCGCCUGUCCAGUACAACGAUCCAANNN
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAUUAAUUGGAUCAUUU- A U-| A C GU GUCUUCAGUG
G ACGGGUG GA ACGGGAU UCA GGGCAUU \
C UGUCCGC CU UGUCCUA AGU CCCGUAA U
NNNAACCUAGCAACAUGA C CU^ C A GU GAACAAAGUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-193-P2f-v1_5p* |
| mirBase accession | None |
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| Sequence |
0- ACGGGAUCUCAGUGGGCAUUGUC -23
Get sequence
|
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| Mature sequence |
Efe-Mir-193-P2f-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
40- GAAUGCCCUGUGAAAUCCUGUCU -63
Get sequence
|
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