Mir-193-P1n

MirGeneDB ID

Efe-Mir-193-P1n

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-193-P1o Efe-Mir-193-P2c-v1 Efe-Mir-193-P2c-v2 Efe-Mir-193-P2d-v1 Efe-Mir-193-P2d-v2 Efe-Mir-193-P2e-v1 Efe-Mir-193-P2e-v2 Efe-Mir-193-P2f-v1 Efe-Mir-193-P2f-v2

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efet.01.601053: 958-1017 [-]

Precursor
(pre-Mir +30nt flank)

AGCCUAUAAACACCUAAGGUGACUUCCGACGCGGGCUUAUAGGUCCAGAAGAUGAAUGCGAUAGUCUCUACUGGCCUUUAUAGUCCCACUCGGAUACCCUUAAAAACGACGGAAUAGUAA

Get precursor sequence

Structure

        10             20        30        40         50         
AGCCUAUAAACACCUAA-----|   ACU     CGC     UAU-   U    A   UGAAUG 
                      GGUG   UCCGA   GGGCU    AGG CCAG AGA      C
                      CCAU   AGGCU   CCUGA    UCC GGUC UCU      G
AAUGAUAAGGCAGCAAAAAUUC^   ---     CAC     UAUU   -    A   CUGAUA 
.       110       100           90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Efe-Mir-193-P1n_5p*

mirBase accession

None

Sequence

0- GCGGGCUUAUAGGUCCAGAAGA -22

Get sequence

Mature sequence

Efe-Mir-193-P1n_3p

mirBase accession

None

Sequence

38- UACUGGCCUUUAUAGUCCCACU -60

Get sequence