MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-193-P2d-v2

Family name MIR-193 (all species)
Seed UAAUGCC
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-193-P1n  Efe-Mir-193-P1o  Efe-Mir-193-P2c-v1  Efe-Mir-193-P2c-v2  Efe-Mir-193-P2d-v1  Efe-Mir-193-P2e-v1  Efe-Mir-193-P2e-v2  Efe-Mir-193-P2f-v1  Efe-Mir-193-P2f-v2 
Orthologues Bge-Mir-193-P2  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cte-Mir-193-P2  Dgr-Mir-193-P2  Dlo-Mir-193-P2  Ebu-Mir-193-P2  Hme-Mir-193-P2  Hru-Mir-193-P2  Lgi-Mir-193-P2  Llo-Mir-193-P2-v1  Llo-Mir-193-P2-v2  Mgi-Mir-193-P2  Pau-Mir-193-P2  Pdu-Mir-193-P2  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Pve-Mir-193-P2  Rph-Mir-193-P2  Sko-Mir-193-P2  Snu-Mir-193-P2  Spu-Mir-193-P2  Sro-Mir-193-P2  Tca-Mir-193-P2  Xbo-Mir-193-P2 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)		 Efet.01.423007: 841-901 [+]
Precursor
(pre-Mir +30nt flank)
GUGCCUUGCACAUGUUUUGUGGAAGCAAUUCGGGGUUUCUCUGAGCAUUUUCGGUGACUAUUUGAACGAUAAUGCCCUUUGAAAUCCUGAAUUAAACGCCCGAAGUCAGCUAUCCAUGUGC
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Structure
        10          20         30        40        50          
GUGCCUUGCACAUGUUU--| U  AAGC-             UCUGA     U   GUGACU 
                   UG GG     AAUUCGGGGUUUC     GCAUU UCG      \
                   GC CC     UUAAGUCCUAAAG     CGUAA AGC      A
CGUGUACCUAUCGACUGAA^ -  GCAAA             UUUCC     U   AAGUUU 
 .       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Efe-Mir-193-P2d-v2_5p*
mirBase accessionNone
Sequence 
0- CGGGGUUUCUCUGAGCAUUUUCG -23
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Mature sequence

Efe-Mir-193-P2d-v2_3p
mirBase accessionNone
Sequence 
38- AUAAUGCCCUUUGAAAUCCUGAA -61
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