MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-193-P2

Family name MIR-193 (all species)
Seed AAUGCCC
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-193-P2b  Ami-Mir-193-P2a  Ami-Mir-193-P2b  Bge-Mir-193-P2  Bta-Mir-193-P2a  Bta-Mir-193-P2b  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2a  Cfa-Mir-193-P2b  Cja-Mir-193-P2a  Cja-Mir-193-P2b  Cli-Mir-193-P2a  Cli-Mir-193-P2b  Cmi-Mir-193-P2a  Cmi-Mir-193-P2b  Cpi-Mir-193-P2a  Cpi-Mir-193-P2b  Cpo-Mir-193-P2a  Cpo-Mir-193-P2b  Csc-Mir-193-P2v  Cte-Mir-193-P2  Dgr-Mir-193-P2  Dlo-Mir-193-P2  Dno-Mir-193-P2a  Dno-Mir-193-P2b  Dre-Mir-193-P2a  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2  Ebu-Mir-193-P2  Eca-Mir-193-P2a  Eca-Mir-193-P2b  Efe-Mir-193-P2c-v1  Efe-Mir-193-P2c-v2  Efe-Mir-193-P2d-v1  Efe-Mir-193-P2d-v2  Efe-Mir-193-P2e-v1  Efe-Mir-193-P2e-v2  Efe-Mir-193-P2f-v1  Efe-Mir-193-P2f-v2  Ete-Mir-193-P2a  Ete-Mir-193-P2b  Gga-Mir-193-P2a  Gga-Mir-193-P2b  Gja-Mir-193-P2b  Gmo-Mir-193-P2b2  Hme-Mir-193-P2  Hru-Mir-193-P2  Hsa-Mir-193-P2a  Hsa-Mir-193-P2b  Laf-Mir-193-P2a  Laf-Mir-193-P2b  Lan-Mir-193-P2p  Lan-Mir-193-P2q  Lch-Mir-193-P2a  Lch-Mir-193-P2b  Lgi-Mir-193-P2  Llo-Mir-193-P2-v1  Llo-Mir-193-P2-v2  Loc-Mir-193-P2a  Loc-Mir-193-P2b  Lpo-Mir-193-P2n  Lpo-Mir-193-P2o  Lpo-Mir-193-P2r  Mal-Mir-193-P2b2  Mdo-Mir-193-P2a  Mgi-Mir-193-P2  Mml-Mir-193-P2a  Mml-Mir-193-P2b  Mmr-Mir-193-P2a  Mmr-Mir-193-P2b  Mmu-Mir-193-P2a  Mmu-Mir-193-P2b  Mun-Mir-193-P2a  Mun-Mir-193-P2b  Neu-Mir-193-P2a  Neu-Mir-193-P2b  Oan-Mir-193-P2a  Oan-Mir-193-P2b  Ocu-Mir-193-P2a  Ocu-Mir-193-P2b  Pab-Mir-193-P2a  Pab-Mir-193-P2b  Pau-Mir-193-P2  Pbv-Mir-193-P2a  Pbv-Mir-193-P2b  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Pve-Mir-193-P2  Rno-Mir-193-P2a  Rno-Mir-193-P2b  Rph-Mir-193-P2  Sha-Mir-193-P2a  Sha-Mir-193-P2b  Sko-Mir-193-P2  Snu-Mir-193-P2  Spt-Mir-193-P2a  Spt-Mir-193-P2b  Spu-Mir-193-P2  Sro-Mir-193-P2  Sto-Mir-193-P2a  Sto-Mir-193-P2b  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Tgu-Mir-193-P2b  Tni-Mir-193-P2b2  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000186.1: 387561-387618 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGCAUGUGAUGAUACCAGCAAGUAUUUCUGGGAUUUCUGGGGGCAUCCUGUGAUAUUGAACUGACAAUGCCCUAUGAAAUCCUAAAUGUGCCUGCACACCUCGACUACAUGCCUCU
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Structure
        10          20        30        40        50         
AAAGCAUGUGAUGAUACCA--|  A    UUC         UG       CC   GAUAU 
                     GCA GUAU   UGGGAUUUC  GGGGCAU  UGU     U
                     CGU CGUG   AUCCUAAAG  UCCCGUA  ACA     G
UCUCCGUACAUCAGCUCCACA^  C    UAA         UA       --   GUCAA 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-193-P2_5p*
mirBase accessionNone
Sequence 
0- UGGGAUUUCUGGGGGCAUCCUGUG -24
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Mature sequence

Pdu-Mir-193-P2_3p
mirBase accessionNone
Sequence 
36- CAAUGCCCUAUGAAAUCCUAAA -58
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