MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-193-P2n

Family name MIR-193 (all species)
Seed AAUGCCC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-193-P1r  Lpo-Mir-193-P1s  Lpo-Mir-193-P1t  Lpo-Mir-193-P2o  Lpo-Mir-193-P2r 
Orthologues Bge-Mir-193-P2  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cte-Mir-193-P2  Dgr-Mir-193-P2  Dlo-Mir-193-P2  Ebu-Mir-193-P2  Hme-Mir-193-P2  Hru-Mir-193-P2  Lgi-Mir-193-P2  Llo-Mir-193-P2-v1  Llo-Mir-193-P2-v2  Mgi-Mir-193-P2  Pau-Mir-193-P2  Pdu-Mir-193-P2  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Pve-Mir-193-P2  Rph-Mir-193-P2  Sko-Mir-193-P2  Snu-Mir-193-P2  Spu-Mir-193-P2  Sro-Mir-193-P2  Tca-Mir-193-P2  Xbo-Mir-193-P2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013673421.1: 20320-20381 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCUAGCGGGUACCUGCUGUGGCAAACUUGGGGUUUCUAACCGGCAUUCACCAUGGCCCGUUAACAUGCAAUGCCCUUGGAAAUCCCAAAUGUGCGCAGCAAGAUGCAACAUUCCAGGGG
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Structure
        10           20        30        40        50         60
CCCCCUAGCGGGUACCU---|     G  AAC             CC      -  CCAUGGC 
                    GCUGUG CA   UUGGGGUUUCUAA  GGCAUU CA       C
                    CGACGC GU   AACCCUAAAGGUU  CCGUAA GU       C
GGGGACCUUACAACGUAGAA^     -  GUA             C-      C  ACAAUUG 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-193-P2n_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGGGUUUCUAACCGGCAUUCAC -23
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Mature sequence

Lpo-Mir-193-P2n_3p
mirBase accessionNone
Sequence 
40- CAAUGCCCUUGGAAAUCCCAAA -62
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