MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-193-P1r

Family name MIR-193 (all species)
Seed ACUGGCC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-193-P1s  Lpo-Mir-193-P1t  Lpo-Mir-193-P2n  Lpo-Mir-193-P2o  Lpo-Mir-193-P2r 
Orthologues Aae-Mir-193-P1  Aga-Mir-193-P1  Bge-Mir-193-P1  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dpu-Mir-193-P1  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Eba-Mir-193-P1  Esc-Mir-193-P1  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Isc-Mir-193-P1  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Mgi-Mir-193-P1  Mom-Mir-193-P1  Npo-Mir-193-P1  Obi-Mir-193-P1  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pau-Mir-193-P1  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rph-Mir-193-P1  Snu-Mir-193-P1  Tca-Mir-193-P1  War-Mir-193-P1  Xbo-Mir-193-P1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665895.1: 82429-82493 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAACACAAGCAACUAUGACGCGUAGCGCCUGGGUCUUAGAGGUGCAGUGGGUGGAAGUCUCUUUGACAAGUCUACUGGCCUGUUAAGUCCCAAGCACUGCGUGUUUCCAUCUUCAAAUCUACAA
Get precursor sequence
Structure
        10          20        30        40         50        60  
GGAACACAAGCAACUAU--         C  C    U     -|   G       UGGAAGUCU 
                   GACGCGUAG GC UGGG CUUAG AGGU CAGUGGG         \
                   UUGUGCGUC CG ACCC GAAUU UCCG GUCAUCU         C
AACAUCUAAACUUCUACCU         A  A    U     G^   -       GAACAGUUU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-193-P1r_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGGUCUUAGAGGUGCAGUGGG -22
Get sequence
Mature sequence

Lpo-Mir-193-P1r_3p
mirBase accessionNone
Sequence 
43- UACUGGCCUGUUAAGUCCCAAG -65
Get sequence