MirGeneDB 3.0

MirGeneDB ID

Xla-Mir-193-P2a4

Family name MIR-193 (all species)
Seed AAUGCCC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-193-P1a3  Xla-Mir-193-P1a4  Xla-Mir-193-P2a3 
Orthologues Ami-Mir-193-P2a  Bge-Mir-193-P2  Bta-Mir-193-P2a  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2a  Cja-Mir-193-P2a  Cli-Mir-193-P2a  Cmi-Mir-193-P2a  Cpi-Mir-193-P2a  Cpo-Mir-193-P2a  Cte-Mir-193-P2  Dgr-Mir-193-P2  Dlo-Mir-193-P2  Dno-Mir-193-P2a  Dre-Mir-193-P2a  Ebu-Mir-193-P2  Eca-Mir-193-P2a  Ete-Mir-193-P2a  Gga-Mir-193-P2a  Hme-Mir-193-P2  Hru-Mir-193-P2  Hsa-Mir-193-P2a  Laf-Mir-193-P2a  Lch-Mir-193-P2a  Lgi-Mir-193-P2  Llo-Mir-193-P2-v1  Llo-Mir-193-P2-v2  Loc-Mir-193-P2a  Mdo-Mir-193-P2a  Mgi-Mir-193-P2  Mml-Mir-193-P2a  Mmr-Mir-193-P2a  Mmu-Mir-193-P2a  Mun-Mir-193-P2a  Neu-Mir-193-P2a  Oan-Mir-193-P2a  Ocu-Mir-193-P2a  Pab-Mir-193-P2a  Pau-Mir-193-P2  Pbv-Mir-193-P2a  Pdu-Mir-193-P2  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Pve-Mir-193-P2  Rno-Mir-193-P2a  Rph-Mir-193-P2  Sha-Mir-193-P2a  Sko-Mir-193-P2  Snu-Mir-193-P2  Spt-Mir-193-P2a  Spu-Mir-193-P2  Sro-Mir-193-P2  Sto-Mir-193-P2a  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Xbo-Mir-193-P2  Xtr-Mir-193-P2a 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030741.1: 80385641-80385701 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUAUACAGCUGUAUACCGCAGGGAAAAUAAGGGACUUUUGGGGGCAGAUGUGUUUCACUUACACUACCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAGUGUUCUUCAGAAUCUCUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
CCUAUACAGCUGUAUACC--|      A        AC           GA    UUUCACU 
                    GCAGGGA AAUAAGGG  UUUUGGGGGCA  UGUG       \
                    CGUUCUU UUAUUCCU  AAAAUCCCCGU  AUAC       U
GUCUCUAAGACUUCUUGUGA^      G        A-           A-    CAUCACA 
 .       110       100        90         80         70
Deep sequencing
Go to detailed chart
CommentAlthough the 3' terminal U is templated it is assumed that this is post-transcriptionally added similar to other vertebrates.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-193-P2a4_5p*

mirBase accessionNone
Sequence
0- AGGGACUUUUGGGGGCAGAUGUG -23
Get sequence
Mature sequence

Xla-Mir-193-P2a4_3p

mirBase accessionNone
Sequence
40- UAAUGCCCCUAAAAAUCCUUA -61
Get sequence