Mir-193-P2a

MirGeneDB ID

Pab-Mir-193-P2a

Family name

MIR-193 (all species)

Seed

AAUGCCC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-193-P1a Pab-Mir-193-P1b Pab-Mir-193-P2b

Orthologues

Ami-Mir-193-P2a Bge-Mir-193-P2 Bta-Mir-193-P2a Cbr-Mir-193-P2-v1 Cbr-Mir-193-P2-v2 Cel-Mir-193-P2-v1 Cel-Mir-193-P2-v2 Cfa-Mir-193-P2a Cja-Mir-193-P2a Cli-Mir-193-P2a Cmi-Mir-193-P2a Cpi-Mir-193-P2a Cpo-Mir-193-P2a Cte-Mir-193-P2 Dgr-Mir-193-P2 Dlo-Mir-193-P2 Dno-Mir-193-P2a Dre-Mir-193-P2a Ebu-Mir-193-P2 Eca-Mir-193-P2a Ete-Mir-193-P2a Gga-Mir-193-P2a Hme-Mir-193-P2 Hru-Mir-193-P2 Hsa-Mir-193-P2a Laf-Mir-193-P2a Lch-Mir-193-P2a Lgi-Mir-193-P2 Llo-Mir-193-P2-v1 Llo-Mir-193-P2-v2 Loc-Mir-193-P2a Mdo-Mir-193-P2a Mgi-Mir-193-P2 Mml-Mir-193-P2a Mmr-Mir-193-P2a Mmu-Mir-193-P2a Mun-Mir-193-P2a Neu-Mir-193-P2a Oan-Mir-193-P2a Ocu-Mir-193-P2a Pau-Mir-193-P2 Pbv-Mir-193-P2a Pdu-Mir-193-P2 Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Pve-Mir-193-P2 Rno-Mir-193-P2a Rph-Mir-193-P2 Sha-Mir-193-P2a Sko-Mir-193-P2 Snu-Mir-193-P2 Spt-Mir-193-P2a Spu-Mir-193-P2 Sro-Mir-193-P2 Sto-Mir-193-P2a Tca-Mir-193-P2 Tgu-Mir-193-P2a Xbo-Mir-193-P2 Xla-Mir-193-P2a3 Xla-Mir-193-P2a4 Xtr-Mir-193-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054697.2: 14023242-14023302 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCAGCUGGUUCGUUACCGCAGGGAAAAUGAGGGACUUUUGGGGGCAGAUGUGUUUCCAUUCCACUAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAGUAUUCCUCGGGGGUCCCU

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Structure

        10          20        30        40        50        60 
GCCAGCUGGUUCGUUACC--|     AA        AC           GA    UUUCCAU 
                    GCAGGG  AAUGAGGG  UUUUGGGGGCA  UGUG       \
                    CGUUCU  UUAUUCCU  AAAAUCCCCGU  AUAC       U
UCCCUGGGGGCUCCUUAUGA^     CG        A-           A-    UAUCACC 
 .       110       100        90         80         70

Deep sequencing

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Comment

Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the CAGE data from de Rie et al. (2017). All other osteichthyians are treated accordingly.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-193-P2a_5p*

mirBase accession

None

Sequence

0- AGGGACUUUUGGGGGCAGAUGUG -23

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Mature sequence

Pab-Mir-193-P2a_3p

mirBase accession

None

Sequence

40- UAAUGCCCCUAAAAAUCCUUA -61

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